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Information for unigene UN40576
| FASTA Sequence |
| Unigene ID: UN40576 | Length: 1239 |
SSR | | GGACACACAACAACATTTTCTGATAAAAACATAATCAATTCATTCATATTACCAAGGATGAAAAAATCACTTATATTTTCATTTAA
TGTGTTAACTATCCTCGTCATTCTTGTACTAGTGGCCATGTCCTCTGGGAAGCTGCAATTGGCAGAGGAGTGCATGAAGTATGCGA
TGGATTTGAGTGGTTTGTTACTGCTTTATTCTTCTCTGGGAGATGCTGAAGGCGTGTCAAAACTTGCAACACTTGCTAGAGAACAA
GGGAAGAACAACGTCGCCTTTCTTTGCCTGTTCATGCTGGGTAAATTGGAAGATTGTTTGGACTTATTAGTGGAGAGTAACCGGAT
ACCAGAAGCTGCTCTGATGGCAAGATCATATCTTCCAAGCAAAGTCTCGGAGATCGTAGCTCTGTGGAGGAAAGATTTGAGCAAGA
TTAATTCAAAAGCAGCGGAATCTTTGGCTGATCCTGAGGAGTACTCAAATCTTTTTGATGATTGGCAAGTTGCTCTTTCCGTCGAA
GCGAAAGCTGCAGAGACGAGGGGAGTTTATTCAGCTGCCGAAAACTATCCTAGCCATGCTGATAGATCATCCATGACCCTAGTGGA
AGCCTTTAGAAACTTGCAAGTTGAGGAAGAGGAATCATTTGAAAATGGAGACATGGATCATGAGGAGGTAGTAGCAGAAGAAGAAA
ATGGAGATGAAGAAAAGCATGAAGAAGAAGGAGTGGTTGTTGATGGTGACTCAACCGATGGAGCAGTGCTTGTAAACGGAAGTGAG
GCTGAAGAAGAGTGGGATACGAATAATGAAGGAAACCCATCAGCTTAATAGCAAAAGTAGTTGCAAGGCCAATATCTGAATATTTT
GTCTCCAGTGAGCAATGGCCAAAGTTGAAGCAACAATGGTGGTGAGGTGAGACTAAGTTTCTTTCTGAACAACATGGCTCAAGTGT
TCGAGGAGCATGGAACCCCACATTCATTGAAGAGTGTTTGATACCCATTGTAATAAGAAGTTTTTGAGGATTTAGATGAAAAGAGA
GAGAGAGAGAGAGAGAGAGTGAGAGAGTTGCTCAAAGGAAAAATGGTAGTAGTGTTCCTTTTGTTCGTCTCTTTTGCACTGAGAGA
GATTCTTTAGTATTATTATTACACATGGTTTTGTTTTTTTTCTTACAAACTACTTTTAATTTTATTGTCTTGCCTGTAAAATGATT
TGTTTTATTTTTGTCCAAAATTTATTGTTTTTTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002304182 predicted protein [Populus trichocarpa] | 938 | 6e-099 |
| XP_002528189 coatomer beta subunit, putative [Ricinus communis] | 920 | 7e-097 |
| BAC42999 putative coatomer complex subunit [Arabidopsis thaliana] | 911 | 8e-096 |
| NP_175645 coatomer subunit beta'-2 [Arabidopsis thaliana] | 911 | 8e-096 |
| XP_002891693 hypothetical protein ARALYDRAFT_474357 [Arabidopsis lyrata subsp. lyrata] | 911 | 8e-096 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C827 Coatomer subunit beta'-2 | 911 | 3e-097 |
| Q8L828 Coatomer subunit beta'-3 | 852 | 2e-090 |
| Q6H8D6 Putative coatomer subunit beta'-3 | 781 | 4e-082 |
| Q6H8D5 Coatomer subunit beta'-2 | 778 | 9e-082 |
| Q9CAA0 Coatomer subunit beta'-1 | 736 | 7e-077 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PF13 Predicted protein | 938 | 4e-099 |
| B9SQC0 Coatomer beta subunit, putative | 920 | 5e-097 |
| A5AWP2 Putative uncharacterized protein | 906 | 2e-095 |
| B9DFE3 AT3G15980 protein | 852 | 4e-089 |
| C0Z2S5 AT3G15980 protein | 852 | 4e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G52360.1 coatomer protein complex, subunit beta 2 (beta prime), putative | 911 | 3e-098 |
| AT3G15980.1 coatomer protein complex, subunit beta 2 (beta prime), putative | 852 | 2e-091 |
| AT3G15980.2 coatomer protein complex, subunit beta 2 (beta prime), putative | 852 | 2e-091 |
| AT3G15980.3 coatomer protein complex, subunit beta 2 (beta prime), putative | 852 | 2e-091 |
| AT1G79990.3 protein binding / structural molecule | 736 | 6e-078 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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