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Information for unigene UN40651

FASTA Sequence
Unigene ID: UN40651Length: 1036 SSR 
GGATTGTTCTCTAGATAGCACAACCCTAAAACTCTCCTGTCGAATCTCTCTTTTCCTCCTTGATCAACAATGGAATTTTGGGGAGT
TGAAGTTAAGGCTGGGATGCCACTTAAAGTGAGGCCTCAAGTAGACCATGTCATCCACCTTTCTCAGGCTGCAGTCGATGCCAAAA
AGGGAGAATCTGGTCTCTTGTACGTGACTATTGATTGGAAGAAATATGTCATTGGAACGCTCTCTCAAGACCACATTCCTCAGATG
ACCTTTGACCTTGTCTTCGAGCAGGAGTTTGAGCTTTCTCACTCTTTGGAGAGTGGAAGCGTCCACTTTGTTGGCTACAGATCTCC
CAACATCGATCAAGAGGAGGACTACCCTTCTGATTCCGAGGAGGAGGAGGAGGTTGTTCCTGCTACTTCAACTGTCACTTCCGTTG
GGAATGCTGCTGCTGCTTCCAAGGCTGCTGGCTCAAAACCAAAAGCCAAGCCTGCTGAAGTGAAGCCTGAGTCAGAGTCTGATGAT
GATGATGAGTCTGAGGAGGAGAAGGATGAAGAAGATGACTCTGAGGAGGAGGATGAAGAGGAAGAGGAGGAGACCCCTAAGCAGCC
TTTGGAGCCGAGCAACAAGAAGAGGGCCACTGCATCTGCTTCCAAAACACCTGTCCCAGCAAAGAAGACCAAAACTGCAGTAGCAC
CCACTCAGAACACTGAAGAGAAGAAGAAGAAGGGCGGGCACACAGCTACACAACACCCCGCTAAAAAGGGTGGAAAGAGTCCTAAC
CAGAGCCCAGGTCAATCATCCAATGGAAACAAGAAGCAATTCAATTCTGGCAAGCAGTCTGGTTCTAACAACAAGGGCAAGGGAAA
AGGAAAGGGCAGAGCCTAAGCTTGATGTGTGAGCAACAATAAGTAGTTTTTGGTTTTTACTCTGTCTTAAGATTTTATCTATTATC
GGAAAAGTTATCTAACAATGATGAAGAACTTTGTCTACTACTACTACTACTACTAGTAAGGGTATTGAAAAATACCATCATCTTCA
AGTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_851056 histone deacetylase HDT2 [Arabidopsis thaliana]6841e-069
NP_197657 histone deacetylase HDT2 [Arabidopsis thaliana]6804e-069
XP_002875683 hypothetical protein ARALYDRAFT_484880 [Arabidopsis lyrata subsp. lyrata]5228e-051
ACZ54945 type 2 histone deacetylase a [Nicotiana tabacum]4879e-047
XP_002313645 histone deacetylase [Populus trichocarpa]4861e-046

Swiss-Prot top hits (Blast detail)Scoree value
Q56WH4 Histone deacetylase HDT26845e-071
Q9FVE6 Histone deacetylase HDT15368e-054
Q6V9I6 Histone deacetylase HDT14686e-046
Q9M4U4 Histone deacetylase HDT34345e-042
O24591 Histone deacetylase HDT13621e-033

TrEMBL top hits (Blast detail)Scoree value
Q3E700 Putative uncharacterized protein At5g22650.26803e-069
B9HQL3 Histone deacetylase4868e-047
A9P996 Putative uncharacterized protein4832e-046
A9P950 Putative uncharacterized protein4643e-044
A9P9Y3 Putative uncharacterized protein4643e-044

Arabidopsis top hits (Blast detail)Scoree value
AT5G22650.1 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase7633e-081
AT5G22650.2 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase7591e-080
AT3G44750.1 HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding5421e-055
AT5G03740.1 HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding3933e-038
AT4G26630.1 EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species: Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source: NCBI BLink).1343e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
104  100%

Unigene MembersMember information