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Information for unigene UN40660

FASTA Sequence
Unigene ID: UN40660Length: 1155 SSR 
GTGAGCCTTCAAAATTGACGCCAAAACTCTCTCTCTCTCTCTCTCTCTCGACGACGACGACGACCACCACTCTCTACCGGAAAACG
ATTGAACCGCGGGAGATCTCATCAGAATGAGTAACGCGCTTCTCGACATCGATCCTATCGACCTTCAATTCCCTTTTGAATTGAAG
AAGCAGATCTCTTGCTCTCTCTATTTGGCTAACAAGACCGACAGTTATGTAGCCTTCAAGGTTAAAACGACGAATCCAAAGAAGTA
CTGCGTGAGGCCTAACACTGGCGTTGTTCTTCCCAGATCCTCTTCTGAAGTTCTTGTGACGATGCAAGCGCAGAAGGAAGCTCCTG
CTGATATGCAGTGCAAAGACAAGTTCTTGCTTCAATGTGTTGTGGCTACTCCCGGTGTCACTCCCAAGGATGTTACTCCCGAGATG
TTTAGCAAAGAGGCGGGGAATCGAGTTGAGGAGACGAAACTGAGAGTTGTCTATGTTGATCCACCACGACCACCTTCACCGGTTCA
TGAAGGATCAGAAGAGGGCTCTTCACCAAGAGCTTCTGTCTCTGACAATGGGAACAACAACAACGCTTCTGACTTTACTGCTGCTC
CAAGATTTAGCGTGGACAGGCTTGAACCTCAGGATAACCCATCTGAGGCGAGAGCGCTCATCACAAGGCTCACCGAGGAAAAGAAC
TCTGCGGTTCAACTGAACAATAGACTTCAACAAGAATTGGAGCAGTTGAAGCGTGGAAGCAATAGAAGTCAGAGTGGTGGTGGGAT
CCCGTTCATGTACGTTCTTCTGGTAGGACTAATAGGTCTAGTCTTGGGATACATTATGAAGAGGACATGATCACGTTCGAAAACTA
TAATACCGTCAGAATGACATTCAGTCTTGGTCTTATCGTCTGTTATTTCACCTTTGGTTGAATCTTAAACCTAGTTTGCGTTAGTG
GATTGATTGTGCTACGGTTTTCATATTTTTTTTGTAACACGTGTTACGGTTTTCGTAGTACTTACAATTTTCCTCCTTTTTTTTCA
ACATTTGTAATCCAAAAGACATTTTGTTTCTGTATGTTCTGTTCTCGCCTACTCTTAACTTCTTCTCGTCTCCGTTTTATGTACTT
GTTAGAAATAAAATAAAATAAAAAAACATTTTTATTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002880160 hypothetical protein ARALYDRAFT_483647 [Arabidopsis lyrata subsp. lyrata]10632e-113
NP_182039 VAP-like protein 12 [Arabidopsis thaliana]10514e-112
NP_567101 vesicle associated protein [Arabidopsis thaliana]9466e-100
AAM63134 putative VAMP-associated protein [Arabidopsis thaliana]9304e-098
CBI38911 unnamed protein product [Vitis vinifera]8623e-090

Swiss-Prot top hits (Blast detail)Scoree value
O60119 Vesicle-associated membrane protein-associated protein C16G5.05c2025e-015
Q10484 Uncharacterized protein C17C9.121846e-013
Q9P0L0 Vesicle-associated membrane protein-associated protein A1811e-012
Q5R601 Vesicle-associated membrane protein-associated protein A1811e-012
Q9Z270 Vesicle-associated membrane protein-associated protein A1802e-012

TrEMBL top hits (Blast detail)Scoree value
Q9SHC8 At2g4514010513e-112
Q8VZ95 At3g606009464e-100
Q8LDM1 Putative VAMP-associated protein9303e-098
B9GPC4 Predicted protein8613e-090
B9RD68 Vesicle-associated membrane protein, putative8523e-089

Arabidopsis top hits (Blast detail)Scoree value
AT2G45140.1 PVA12 (PLANT VAP HOMOLOG 12); structural molecule10726e-117
AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding9679e-105
AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding7105e-075
AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding7062e-074
AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein6353e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  40%
 
82  40%
 
91  20%

Unigene MembersMember information