RadishBase

| | | |

Information for unigene UN40664

FASTA Sequence

Unigene ID: UN40664	Length: 935	SSR
GAGTGTGCTCACAGTTATATAATTAAAATCATAGACATACAAATCACAGTGCTGAAGCAGAGTATTTGAAACTCCAAAGACAAAGT CACTCTAAAAAAATTCTGATTATAAAGCAGGCAAAAATTTTACAGAGACGGATGATGATAGTGTTTGGGATCATGCGAAGGCTCGA GGAGTTTTGTGTGTGTGTGTGTGTGTGTGTTTTGTTGTTGTTCTAACAAGAGCATCCTCCTGATTGCTGTTGAGCCAAAGATGCAT TTGCATTGGAGGATTTGAGATTGACATCAACCATGTCCTCTTGCTTTGTCGAAGACAGTGTTTCCATTCCTGGCAAAGCTGCTGCT ATCTTACGGAAAAGCGCCTTTATGTTGAAGCCTGCTTTGGCACTGGTTTCGATAAACATTACATTAAGCTCACGAGCCTTAGCTTC TGCTTCCTCTATCGACACTTGCCTTTTGTCCACAAGGTCGGTTTTATTTCCCACAAGTACAACAATGACATCACTACCACGCTCGG TCCTAACCTCATCGATCCACTTAGTAGTGTTTAGGAAGGATTGCCTGCTTGCAACATCATAGACAATAACAGCAACAGAAGAGTCC CTAATGTAACTCGGAATAAGACTCCTGAACCTCTCTTGCCCAGCTGTATCCCATAGCTGCAGCCTGACAGTTCGGTCTTCAAGGTA CATTGTTTTCGATAGAAAATCAATACCAATCGTGGCCTGGTAAGTGTTGTCGAATTTGTCGTACATGAATCGAGTGATGATGCTCG TCTTTCCCACGGATTGATCTCCCAGAAACACCAGCCTATACTTTGTGAGCGCCGACACCGGAGCCATGATTCCCTCGAGATCAACC TAGCCGGAACGATCTCAGATACGCCGAGTATATGTATCTGCCAGATTTCAATTACTCTGAGTAAAGCTGATCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_181989 Ras-related protein RABH1B [Arabidopsis thaliana]	1025	3e-109
XP_002526504 protein with unknown function [Ricinus communis]	987	8e-105
XP_002302484 predicted protein [Populus trichocarpa]	985	1e-104
XP_002266653 PREDICTED: hypothetical protein [Vitis vinifera]	981	4e-104
AAA74117 putative [Nicotiana tabacum]	978	9e-104

Swiss-Prot top hits (Blast detail)	Score	e value
O80501 Ras-related protein RABH1B	1025	1e-110
Q9SMR4 Ras-related protein RABH1C	796	5e-084
P20340 Ras-related protein Rab-6A	771	4e-081
P35279 Ras-related protein Rab-6A	771	4e-081
Q5RAV6 Ras-related protein Rab-6A	771	4e-081

TrEMBL top hits (Blast detail)	Score	e value
B9SKH4 Putative uncharacterized protein	987	5e-105
B9GP45 Predicted protein	985	9e-105
Q40525 Nt-rab6 protein	978	6e-104
Q8H4Q9 GTP-binding protein Rab6	966	1e-102
A5BUZ6 Putative uncharacterized protein	963	3e-102

Arabidopsis top hits (Blast detail)	Score	e value
AT2G44610.1 RAB6A; GTP binding / protein binding	1026	9e-112
AT5G10260.1 AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding	904	1e-097
AT2G22290.1 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding	863	7e-093
AT4G39890.1 AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding	797	3e-085
AT5G64990.1 AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding	746	3e-079

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			50%


7	1			50%

Unigene Members	Member information