RadishBase

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Information for unigene UN40684

FASTA Sequence

Unigene ID: UN40684	Length: 1171	SSR
TTTTTGTTTTTTGCTCTGTAAAGAATTAAAAGTTTCTTCCTTTCTTAATTTATATGAATCATTGATTCTCAAAGTTTTCTCCTTTT ACCGTTTATTCTTAAGGAAGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTGTATATAAACAAGAAGCATCTCTTGATTAC TAGACACTGAAAGAAGTCAAAAATTATTTTTGTTTGTTTGTTTGTGAAGTAGTAGGGTTTTGGTCTGATTTGATTTGATCTCTCCT GAGTTTTTGTCGGTTGGGTTCTTTGTTTTATTTCTACAGTATTAGATCGACAAAAGAAAAAACAAAAAACAAAAAGGAGAGTTGTG GAGTGAGATCACTGCAGAAAAAAAAATGGGATCTTCTTCAGGACAAAGTGGATATGATCTGTCTTTCAAGATCTTGTTGATTGGAG ATTCTGGTGTTGGTAAAAGCAGCTTGCTTCTCAGTTTCATTTCCAGCTCTGTCCAAGCTCTTGCTCCCACCATAGGTGTTGATTTT AAGATCAAACAGCTGAGAGTAAGAGGAAAAAGAGTAAAGCTTACAATCTGGGACACAGCTGGACAAGAAAAGTTCAGGACATTGAC AAGTTCTTATTTCAGAGGCTCCCAAGGGATCATTCTCGTTTATGATGTGGCGAAAAGAGAGACGTTTCTGAACTTGGCAGATGTTT GGGCCAAAGAGATTGAGCTCTACTCGACTAACCATGACTGCATTAAGATGCTCGTTGGCAACAAAGTCGACAGAGAATCTGAGAGG AAGGTAAGCCGGGAAGAAGGAACGGCTCTAGCGAAAGAACTCAAGTTTTTGTTTCATGAATGTAGCGCAAGAACCAGAGAAAACGT GAAGCAATGCTTTGAAGAGCTTGCTCTCAAGATAATGGATGTACCTAGTCTTTTGCAAGAAGGATCAAGCTCTCTGAAGAGAAAAC CGGATTGTCGAAATCATCAAAGCCGTTGCTGCTCGTGAGCTGTTTGATCATTGAAACCCGCCTAGGCTCTTTTTTATGTGTAAATT TATATCAAGAAGATGAAGCTTGGCTTCTCTGTAAATCTATCAGTTCAGTTCCTTAGATTGTTCATTTTGCCTCGTCTGAGATTGTG TAATAAAGTTAATAACCTCATTATACAGAATGTCTTAAAAATATCTTATTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_187602 RAB GTPase-like protein C2B [Arabidopsis thaliana]	946	6e-100
XP_002884760 hypothetical protein ARALYDRAFT_478315 [Arabidopsis lyrata subsp. lyrata]	946	6e-100
NP_568121 RAB GTPase-C2A [Arabidopsis thaliana]	838	2e-087
XP_002267276 PREDICTED: hypothetical protein [Vitis vinifera]	789	1e-081
XP_002326383 predicted protein [Populus trichocarpa]	770	2e-079

Swiss-Prot top hits (Blast detail)	Score	e value
P36862 GTP-binding protein yptV3	484	1e-047
Q6DHC1 Ras-related protein Rab-18-B	472	2e-046
Q5ZLG1 Ras-related protein Rab-18	469	6e-046
Q05976 Ras-related protein Rab-18A	469	6e-046
Q5EB77 Ras-related protein Rab-18	467	9e-046

TrEMBL top hits (Blast detail)	Score	e value
Q9SF92 At3g09910	946	4e-100
O49841 AtRab GTP-binding protein	838	1e-087
B9MTI0 Predicted protein	770	1e-079
B9S0D3 Putative uncharacterized protein	769	1e-079
C6TK67 Putative uncharacterized protein	761	1e-078

Arabidopsis top hits (Blast detail)	Score	e value
AT3G09910.1 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding	946	2e-102
AT5G03530.1 RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding	839	6e-090
AT1G43890.1 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	695	3e-073
AT1G43890.2 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	695	3e-073
AT1G43890.3 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	695	3e-073

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			100%

Unigene Members	Member information