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Information for unigene UN40686

FASTA Sequence
Unigene ID: UN40686Length: 972 SSR 
GCATTCCACCGGTCTCATGGACTCCGCAGCACACAACCACTTCAAACGCCCCTGTTTGTTTGAAGACCTTGAAGATGAAGATGCTG
AGACCACTTTACATGCCAATAAAGAGCATGCTAGTTCAGCCATCCAGAGCTTCTTCACTGGACCTGTTAAAGCCGAAGAGGCAACT
CCAACGCCAACTCTAAAAGTTACTAAAAAGAGAGGGAGGAAGAAGAAGAACTCTGATCCTGTCAATCCAGAGGAAGTAAACTCATC
TGCTCCAAGAGATGATGACTCTGAGAGCCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACAGTGACTGCAGAAGAGA
GAGAGAGGGCCATCAATGCATCCAAAACGTATGAGCCAACAAACCCTTTCTTCAGAGTTGTTCTGCGACCATCTTATCTATACAGA
GGTTGTATCATGTATTTGCCTTCTGGTTTTGCTGAGAAGTACTTAAGTGGGATCTCGGGGTTCATCAAGGTCCAGCTCGGGGAGAA
ACAATGGCCTGTGAGATGCCTTTACAAAGCAGGGAGAGCTAAGTTCAGTCAAGGTTGGTATGAGTTTACTGTGGAGAATAACTTAG
GAGAAGGTGATGTCTGCGTGTTTGAGCTTCTAAGAACCAGAGATTTCGTTCTCAAAGTGACGGCCTTTCGAGTCAATTGACTATGT
TTGAGACATGAGATCACTCACTGTAAGGTACTATGGTGTAGGGTGTCTTGATTTAAAACTGATAAACTTGTTTTCTATCTATGTGT
GCATTGCGTTAGTTTCTCATTTCTTGCTGGTGTGGATAAGTTAAAACCTCTTCGGAGTGAAACTAAAATTGTTTGTGTAAGTTAGG
GTTAAGATGTTTTTTGGAAATTTGTAAATCCCTAATCTCCACAAGTTTGGTGTTGAAACGTGTGTCCCAAGAAAGATGTTATGATG
AAGATGGGTTTGTTGTTTTTGTTGCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAR92199 reduced vernalization response 1 [Brassica rapa]10155e-108
AAQ55453 reduced vernalization response 1 [Brassica rapa subsp. campestris]10083e-107
BAB01695 unnamed protein product [Arabidopsis thaliana]9465e-100
NP_188529 B3 domain-containing transcription factor VRN1 [Arabidopsis thaliana]9001e-094
BAJ34355 unnamed protein product [Thellungiella halophila]8991e-094

Swiss-Prot top hits (Blast detail)Scoree value
Q8L3W1 B3 domain-containing transcription factor VRN19004e-096
Q9XIB5 B3 domain-containing protein REM198352e-088
Q2QMT2 B3 domain-containing protein Os12g05923001603e-010
Q8S2E6 B3 domain-containing protein Os01g07235001452e-008

TrEMBL top hits (Blast detail)Scoree value
Q6R2U8 Reduced vernalization response 110153e-108
Q6V0J6 Reduced vernalization response 110082e-107
B9RZH6 DNA binding protein, putative6499e-066
B9N4T6 Predicted protein (Fragment)6221e-062
B9NJ20 Predicted protein (Fragment)6013e-060

Arabidopsis top hits (Blast detail)Scoree value
AT3G18990.1 VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor9004e-097
AT1G49480.1 RTV1 (related to vernalization1 1); DNA binding / transcription factor8351e-089

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
66  100%

Unigene MembersMember information