RadishBase

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Information for unigene UN40697

FASTA Sequence

Unigene ID: UN40697	Length: 1042	SSR
GGATTCACATTCACATTCACATTCTTCTTCTTACTCCTCCTATGATCAATCACGTCCTTTGTGTCCTCTGAAATTTACTTAGTTTT TTTGTCTTTTTTTTTTGTGCGGGAGATGGTTCATTGAATCTAGATGGTAGAATATTCATAGGAATTGGCTTCATATAGAGGGGTTC TCTAGGTTCCTCAGGTATACATCTGAGGTTGATTAATTCCTTTTGTGTGTGTGTGTATTTGTATCGGCAATGAGCGCATCAAGGTT CATAAAGTGTGTCACCGTTGGAGATGGAGCTGTTGGCAAAACATGTTTGCTCATTTCTTACACCAGCAACACCTTTCCCACGGACT ATGTCCCCACTGTTTTCGATAACTTTAGTGCCAATGTGGTTGTTAATGGAGCCACGGTCAATCTTGGATTGTGGGATACTGCAGGG CAGGAGGACTATAACAGATTAAGACCATTGAGTTACCGTGGTGCTGATGTTTTCATTCTAGCCTTCTCTCTCATTAGTAAGGCTAG TTATGAGAATGTCTCCAAGAAGTGGATCCCTGAGTTGCAGCATTATGCTCCTGGTGTCCCCATCGTCCTTGTTGGTACCAAACTAG ATTTTCGGGATGACAAGCAGTTTTTCGTAGACCATCCTGGTGCTGTCCCTATTACCACAGCTCAGGGGGAGGAACTGAAGAAGCTA ATTGAAGCGCCTGCTTACATTGAATGCAGTTCAAAATCACAAGAGAACGTGAAGGGAGTTTTCGATGCAGCGATCAGAGTGGTCCT TCAACCTCCAAAGCAGAAGAAAAAGAAGAGCAAGGCGCAAAAAGCTTGCTCCATTTTGTAATAGCTTTCATGGGAGAGAGAGGCTA AGAAGCTCTTTGATGACAGTGGTCTCTCGTTACATTAAGTATTTGCTTTTTCATTTCTTTCTTTTTGTTTTCTTCACTCTTTTCTT CGTTATTGCTGTCTCTTATAAAAATCGAATTATGGGTTTAATTCAACTTACTCATGGTTGAGACATCTATAAATTTTGGACTAGCA GTCTCTCTAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_179371 Rac-like GTP-binding protein ARAC1 [Arabidopsis thaliana]	997	6e-106
XP_002867045 hypothetical protein ARALYDRAFT_491041 [Arabidopsis lyrata subsp. lyrata]	997	6e-106
NP_195320 Rac-like GTP-binding protein ARAC6 [Arabidopsis thaliana]	993	2e-105
BAJ34511 unnamed protein product [Thellungiella halophila]	988	7e-105
Q35638 RecName: Full=Rac-like GTP-binding protein RHO1; AltName: Full=GTPase protein ROP1; Flags: Precursor	987	9e-105

Swiss-Prot top hits (Blast detail)	Score	e value
Q38902 Rac-like GTP-binding protein ARAC1	997	3e-107
Q9SBJ6 Rac-like GTP-binding protein ARAC6	993	8e-107
Q35638 Rac-like GTP-binding protein RHO1	987	4e-106
Q39435 Rac-like GTP-binding protein RHO1	976	8e-105
P92978 Rac-like GTP-binding protein ARAC11	974	1e-104

TrEMBL top hits (Blast detail)	Score	e value
Q8GUU7 Putative ROP family GTPase	987	6e-105
B9MXD5 Predicted protein	985	1e-104
Q8GUV0 Putative ROP family GTPase	982	2e-104
B9SYU4 Rac gtpase, putative	981	3e-104
Q8S2V4 Small G-protein ROP6	981	3e-104

Arabidopsis top hits (Blast detail)	Score	e value
AT2G17800.1 ARAC1; GTP binding	998	2e-108
AT2G17800.2 ARAC1; GTP binding	998	2e-108
AT4G35950.1 ARAC6 (ARABIDOPSIS RAC-LIKE 6); GTP binding	994	6e-108
AT3G51300.1 ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding	975	9e-106
AT4G35020.1 ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase	926	4e-100

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			33%


6	2			67%

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