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Information for unigene UN40705

FASTA Sequence
Unigene ID: UN40705Length: 932 SSR 
ATTTTAGGAAAACAGCAAGCAATTTACTTCACAGTAATCAAACTATTTAAGGGTAAATACTGCAAATCACGTTCAGGAACACAAAA
TAAAACCCGATAAAGTATTTCCTGCTCCCTATACACTTATTTCATTGTAATTGTCACTTCTCATCCACACAGCACAAGCCTAAAAG
GGATGTAGGTACCATGAATCGCTAAAAGCCTTCAAAGACAGTAGCAACCGAGTCTTTCTTATCTCAAAACCCATAAATCTTGAGCT
GATTCCTACTGTGAGAAGGGCCTCTTTTATGCGCAATACTACGACTTACGACGTTGGACCATAAGTCCTCAAAAACCAGAGTGTGT
TGATAGTGTTACTCTCCATTTCGGTTGAGATCTATAGATTCCCGTCAAGAACAAAATCCATTGGAATTGGCTGATTTATAAGGCCA
TATGTTAAGTGAATATATCAAGTACCCGATGATGATTTTTGGATCCACATTTGCTTCTCATGTGAATTGGGACCACCACCACCACC
ACCACCACCACCACCACCTCCTCTCCGGGATGATTTACCCTCACCAGTCATCGCAAAGCCCTCTTCTTTTCTATTGCGAGCTCCAA
CACGGCGACCAGAATGTCTTGTAGAACCATTCTCAAGAGAATGTCCACCAGAGGAGTTCACCACTTCTCCAGATCTTTGCAACAAC
ATCCTTTCTTTCACTTCTCCATTGTTTGCTATTGAAGATGACAGTTGATCCTCGCTGATACTGGACCCATCAGAGCGACGAGGAGT
CCACACAACACGATCAGGTCTCTCCTTGTTTCTTGGACGCCTCTCTTGCTTCTCACTGTTGGTACCAGAAACCTGATAGTCTTTCC
CTGCTCGAGTGTTTCCTGGCCGGGGAGAACGCTTGGAGTTTTCTGCTTCCAAGGGTTCCACTCTTGACTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002891069 ATUPF3/UPF3 [Arabidopsis lyrata subsp. lyrata]5371e-052
NP_174660 Smg-4/UPF3-like protein [Arabidopsis thaliana]4842e-046
NP_001117406 Smg-4/UPF3-like protein [Arabidopsis thaliana]4842e-046
AAG12537 Unknown protein [Arabidopsis thaliana]4366e-041
XP_002526435 conserved hypothetical protein [Ricinus communis]2791e-022

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
B3H5N7 Uncharacterized protein At1g33980.25493e-054
Q9FVW4 Putative uncharacterized protein At1g339804841e-046
Q9FX10 F12G12.20 protein4364e-041
B9SKB6 Putative uncharacterized protein2797e-023
B8AU35 Putative uncharacterized protein1462e-007

Arabidopsis top hits (Blast detail)Scoree value
AT1G33980.1 Smg-4/UPF3 family protein5501e-056
AT1G33980.2 Smg-4/UPF3 family protein5501e-056
AT4G13340.1 leucine-rich repeat family protein / extensin family protein1129e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
94  100%

Unigene MembersMember information