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Information for unigene UN40713

FASTA Sequence
Unigene ID: UN40713Length: 1542 SSR 
GGATCACCCTTTGGTAAATATATAAATCTGACCTATTTTATAGCCTCCCCATCTGTCTATTTGCTTCATCTGGGTTCCTCTTCATA
CAATACGCATCAACGTACCCTCCATTATATTTCTCTATGCACTGTTTCACCGTTAAAAGGAAACCAAAGCTTTGATTTTATGAATA
TTCAAGGTTGAATGGTCAGCAAAGGGGTGGCAGCATCGAGCTCTTGTCTTAAGCAAGGGTCAGTACCTATGGACAATATTCGCGTT
ACACCTGAAGCAACGTATGAAGCTGTGGTTGCTGACCCTAAGCTCTTCATGGGTTCATTGGAAAGGCTACACTCTCGGTTGGGTAC
TAAGTTCATGGTTCCTATTATAGGAGGGAGAGATTTGGACTTGCACAAGCTTTTCGTTGAGGTAACCTCTCGTGGTGGAATCAATA
AGATACTTCATGAAAGGAGATGTAAAGAAGTGACTGCAACATTTGTCTTTCCTCCAACAGCAACAAACGCATCATATGTTCTGCGC
AAATACTACTTCTCCTTGCTTAACAACTATGAGCAAATCTATTTCTTCAGATCCAATAGCCACATTCCTCCAGACTCTCTCCATAC
CCCATCTGGTGCACCAGGGCTTATGCAGGGGGGGCATAAGACCTCCACAAGAACTTCAAGCTTTAGCCTTTACACCACAACCAAGG
ATCAACATTGGAGGAGTTTTAAATGGTGCAAGTGTGATTGGAGTTGTGGATGGGAAATTCGAAGACGGTTACCTTGTAACTGTGAC
AATGGGATCAGAAAAGCTTAAAGGAGTTCTCTGCCAGCTTGTTCCAGAGAACACAGTTGCTGCTCATCAAACTCCACAACAGAGTC
ATCATGGTGGTTTCCCAAACACTTGGAACAACAATGGTCCTTATCCTCAGGGGGTTGTTACTGGAGGAGTGAGGAAACGCCGCAGG
ATAAGGAAGAAGTCAGAGATCAAAAGACGTGATCCTGCTCATCCTAAACCTAACAGAAGCGGTTATAACTTCTTTTTCGCTGAGCA
GCACGCAAGGCTGAAACCGCTGCATCCCGGTAAGGATAGGGAGATCAGCAGGATGATTGGTGAGCTCTGGAACAAGCTTAATGAAC
AAGAGAGATTGGTTTACCAAGGGAAGGCAATGGAGGACAAAGAGAGGTATCGAACTGAAATGGAAGACTACAGAGAGAAGCTTAGG
ACAGGACAGCTTATAAGCAATGCTGTTCCATTGCAGCAGAGGCTTCCTGAGCAAAACGTAGAGATTGCTGAAGTTCCAATGGAAGA
AGCTGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGATTCAAGCGGTGACTCAGGGG
AAAGCGAGCCACATTCTGATGCTGAAATGGAGGAGCCATTTCTTACTCCTTCAGGTCTAAACCTAAACCCTAATCCGAGTGAGATA
GTGGTGGCTCCTAAGGAGAAAGCTAGTGATGTTGTTGTGATGGAAACATCTCCAGGGAAGAAAGACGAAGCATTTTAGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892249 high mobility group family protein [Arabidopsis lyrata subsp. lyrata]10803e-115
NP_171980 high mobility group-box and ARID domain-binding domain-containing protein [Arabidopsis thaliana]10679e-114
CAN83439 hypothetical protein VITISV_021289 [Vitis vinifera]5256e-051
XP_002266394 PREDICTED: hypothetical protein [Vitis vinifera]5256e-051
CBI17313 unnamed protein product [Vitis vinifera]5256e-051

Swiss-Prot top hits (Blast detail)Scoree value
P10103 High mobility group protein B11973e-014
P12682 High mobility group protein B11964e-014
B0CM99 High mobility group protein B11946e-014
B1MTB0 High mobility group protein B11946e-014
Q6YKA4 High mobility group protein B11946e-014

TrEMBL top hits (Blast detail)Scoree value
Q9MAT6 At1g0488010676e-114
A5BNN4 Putative uncharacterized protein5254e-051
B9RWH6 Transcription factor, putative5237e-051
B9GFX2 High mobility group family (Fragment)4888e-047
C5Y176 Putative uncharacterized protein Sb04g0178503973e-036

Arabidopsis top hits (Blast detail)Scoree value
AT1G04880.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein10673e-116
AT1G76110.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein2976e-027
AT1G55650.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein2644e-023
AT3G13350.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein2483e-021
AT4G02810.1 unknown protein1345e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  50%
 
92  50%

Unigene MembersMember information