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Information for unigene UN40743
| FASTA Sequence |
| Unigene ID: UN40743 | Length: 789 |
SSR | | GGGACTCTCGTTCGGCCGTTTCAGCTCTCTCTCTCTCAATCGCAAAACAAAGAATGGCTGGACAAAAGCAAGAGCTTCCCGTTTCC
GGCGAACCCTTATCCGCCGTCGAGAGTCCGATGACAGACGCGACAAACAAGAAGAAGAAAAAGAGCAAGAAGAACAAACACGCAGA
GGTCCAAGTGCCTCAAGAGGTCGTCGAGGAGTTGAGTAGTAAAGAGAAGAAGAAGAAGCGTAAAAGAGAGGAGAAAGAGATGGAGA
AGAAGAAGGATGAGAAGAAGAAGAAGGACGAAGAGAGTGAGAAGGCGGAGCCTGAGGCTTCAAACGGAGGAGAAAGTGAGCAGAAG
GTTGTTGTGACCGGGAAAGGTGCGGGGGAAGCAAAGTACGCAGCTTTGACATCATTTGCTGAGTCGAAGTTGCCTGAGAACGTTCT
TGATTGCTGCAAGACTTTCCAGAAACCTTCTCCGATTCAGTCTCATTCGTGGCCCTTTTTGTTGGATGGTCGCGATCTTATCGGGA
TCGCCAAAACCGGTTCAGGTAAGACATTGGCGTTTGGGATTCCTGCGATTATGCACATGTTGAAGAAGAACAAGAGTGGTAAAGGA
ACAAGGAACCCGACTTGTCTTGTTCTTTCTCCGACAAGAGAGTTAGCTGTTCAGATTTCTGATGTTTTGAGTGAAGCTGGAGAACC
GTGTGGTTTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAAGGCTCAAATTGACGCCATTCGATCTGGAGTTGATATTGTCAT
TGGTACGCCAGGTCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_174479 DEAD-box ATP-dependent RNA helicase 5 [Arabidopsis thaliana] | 856 | 9e-090 |
| XP_002890959 predicted protein [Arabidopsis lyrata subsp. lyrata] | 832 | 5e-087 |
| XP_002519000 dead box ATP-dependent RNA helicase, putative [Ricinus communis] | 592 | 4e-059 |
| ACQ90244 DEAD-box RNA helicase [Glycine max] | 580 | 9e-058 |
| CAN76636 hypothetical protein VITISV_010658 [Vitis vinifera] | 545 | 1e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C551 DEAD-box ATP-dependent RNA helicase 5 | 856 | 4e-091 |
| Q6YS30 DEAD-box ATP-dependent RNA helicase 5 | 498 | 1e-049 |
| Q6CT46 ATP-dependent RNA helicase DBP3 | 335 | 1e-030 |
| A5DAC8 ATP-dependent RNA helicase DBP3 | 312 | 5e-028 |
| A3LRW2 ATP-dependent RNA helicase DBP3 | 295 | 5e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RZ31 Dead box ATP-dependent RNA helicase, putative | 592 | 3e-059 |
| C6G238 DEAD-box RNA helicase | 580 | 6e-058 |
| A5BAJ6 Putative uncharacterized protein | 545 | 7e-054 |
| C0PDP9 Putative uncharacterized protein | 507 | 2e-049 |
| B8A6R8 Putative uncharacterized protein | 498 | 2e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G31970.1 STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | 856 | 4e-092 |
| AT5G63120.2 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 263 | 2e-023 |
| AT5G63120.1 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 263 | 2e-023 |
| AT1G55150.1 DEAD box RNA helicase, putative (RH20) | 251 | 5e-022 |
| AT3G01540.2 DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase | 233 | 7e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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