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Information for unigene UN40804

FASTA Sequence
Unigene ID: UN40804Length: 812 SSR 
ACGTTGAAAAACCATTTACTTATATATAAAAAGAGAGAATCTCTCCTTGGAACTTTACTATGTCTGTAGATACAAACAAACCAAGA
ATGTGTTTCCAATATTTACATCCACACATTTCTTTTTTTTTCGTAAACCTAAATCATCAAGATACAAATTAGATAAATACACACAC
ACTACTGTGCAAGTAACTTCTTCACAGAATACTAACGAGAAAGTATTGAAACTTCTTTTTATTTCTGGGAAAGTTGCAGAGACAGA
ACCTGGTCAGCCTCTAACCTTCCTTGTATTGAAGTAAAATGATAAAAGATCCGTTTTGATCTTCTTCTTGCTGCTGTCATCTTGAA
GCTGAAAGAAACTTGTGGAATCTTTCTATTCTATACAACTTGCGTTGCTGGGATGATGAGTTGTCATGTGACGAGTTCTCGCTCTT
CTTCTTCTTCTTCTTTATCTTCCTGTGGAAGAAATCCTCCGTGTCCAAAACATACGAAATCTTGTAGGAAGAGCAAGACATCTTGC
ACTCGAGGCCATTAATTACTTCTACATTTTCCATTGCCTTGCAGGCTACTGCAAGATCATCTAGACCAGAGTATCCACGCATGTTC
CTTTTTAACACAATGGACTGCGGCACTACTTTTTTCCCTGATGAGTTGGAAAGAAACTCTTTTTGCAGATAATTTGCAAACGTGGG
ATCCATGGAAACTGCACAAGCCTCAGGCTTTTCGATTATATTATCCATAAGCTGGATTGACAAATGAGGTGGAGAGGACGACTACA
TATGAATTAAATAAAACACACAAGTTTCAGGGTTAACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002873701 hypothetical protein ARALYDRAFT_488346 [Arabidopsis lyrata subsp. lyrata]5046e-049
CAC01821 transcriptional regulatory-like protein [Arabidopsis thaliana]4893e-047
NP_197006 paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana]4893e-047
NP_001190311 paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana]4893e-047
XP_002884284 hypothetical protein ARALYDRAFT_477381 [Arabidopsis lyrata subsp. lyrata]4535e-043

Swiss-Prot top hits (Blast detail)Scoree value
Q9LFQ3 Paired amphipathic helix protein Sin3-like 25161e-051
Q9SRH9 Paired amphipathic helix protein Sin3-like 13905e-037
O04539 Paired amphipathic helix protein Sin3-like 42632e-022
Q9XIE1 Paired amphipathic helix protein Sin3-like 52248e-018
O48686 Paired amphipathic helix protein Sin3-like 32184e-017

TrEMBL top hits (Blast detail)Scoree value
B9HLV3 SIN3 component, histone deacetylase complex3298e-029
B9HU88 SIN3 component, histone deacetylase complex3111e-026
Q1EP20 Transcriptional repressor protein-related3082e-026
C5XEY3 Putative uncharacterized protein Sb03g0084903064e-026
B9GHP8 Putative uncharacterized protein SNT9033011e-025

Arabidopsis top hits (Blast detail)Scoree value
AT5G15020.1 SNL2 (SIN3-LIKE 2)5178e-053
AT3G01320.1 SNL1 (SIN3-LIKE 1)3923e-038
AT1G70060.1 SNL4 (SIN3-LIKE 4)2632e-023
AT1G59890.1 SNL5 (SIN3-LIKE 5)2248e-019
AT1G24190.1 SNL3 (SIN3-LIKE 3); transcription repressor2184e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  50%
 
112  50%

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