Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN40815

FASTA Sequence
Unigene ID: UN40815Length: 1063 SSR 
GATATATATGTGACAGAAAACGAATGTAATGATATGATATGTAAGAGGTAATAAAAAGGCTTTTGTATATTTAAAAGTTTTGTGTA
AAAGGTTATAGCTCTTGCAATTCTGTTGAGAAATTAGTCGGTTGTTTTTTAAATCTAAAACGGATCACTGGTTGTTGATTATAGGA
GTAGAAAAAAGAAAAGTCTTTGTGATCATCAGTAAAAAGAAACAAGGGCACAAACTAAAAGAAGATGAACTGAAACCTACTTTAAC
ATCTCTGTCTCTCTATTTATCTAAAACCAAAGCTGAAGTAAAGAGAAAGTAGGAAGCATAAGAAGAAGATGATGTTGAGAGAGTAA
GAAGAAAGCTCAATCTAATTTGAAGGAGGCATGTGTAAACTGAAACAGAGAAGTAAACTGAGACCAGCCAGCCCTGAGGAATGGAC
CATCTCTGTTTACTGAGGATTGTGGCCAGGCCAGAGGTGAGGACGGTACATCTGCTGCATAGGCATTTGGTGAAGTGGTTGCGGCG
GAGGAGAGTTTCCAAATAGTCCGTGATGATTGTTGTTGTTATTGTTGTTGCTACCACGGTGCAACGGAGAGTTACTTTCGTTTTCT
TCTGATGAGTCGCTTGAATGCTGCTGTCCCTGAGACCGAGGAGGGCTTCCTGGTCCTCCACCACCACCACCACCAAAGCTCAACAT
ATTGGCTGGTGCTGAAGCTGGCTCGGGAGTAGGATTCTGAACTCGCGCTGCGCTTTGTTTAGGTTTCTTCACTTCTGGTACAAAGC
TTCCAACAACGACCTATATTAAAACCAGAAGCAAAGTCAGCGTCTTGAAGATTGTGTGAATTTAACTCGGTTTGAGATATGGGAGT
AAACCTGGACTTGTGATCCAGCAACAAGCATTCCAGCAACACAACCACCCACAACCTGACCATCTGGTCTAGCCAGAGATACACTA
AGACTACCGGTTTTAGTCACAGTACCATTACTCTCAGTATTCAAGAAAGAGCCTGACATAGGAATGATCTCATATGGTCCCTGCAT
ATACAACAACACAAGATCACACAGACAATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002868028 hypothetical protein ARALYDRAFT_914905 [Arabidopsis lyrata subsp. lyrata]4351e-040
NP_567546 AT hook motif DNA-binding family protein [Arabidopsis thaliana]3973e-036
CAA11837 AT-hook protein 2 [Arabidopsis thaliana]3911e-035
CAA17138 putative protein [Arabidopsis thaliana]2172e-015
ABR16059 unknown [Picea sitchensis]1804e-011

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q940I0 AT-hook motif nuclear localized protein 133972e-036
O49350 AT-hook protein 23918e-036
O49694 Putative uncharacterized protein AT4g179502171e-015
B8LK79 Putative uncharacterized protein1802e-011
B9GPH1 Predicted protein1784e-011

Arabidopsis top hits (Blast detail)Scoree value
AT4G17950.1 DNA-binding family protein3987e-039
AT4G12080.1 DNA-binding family protein1693e-012
AT4G22770.1 DNA-binding family protein1675e-012
AT5G46640.1 DNA-binding family protein1666e-012
AT4G00200.1 DNA binding1641e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information