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Information for unigene UN40823
| FASTA Sequence |
| Unigene ID: UN40823 | Length: 1209 |
SSR | | TTTTTCATCCCGATCTTCAGAAAGTGGGAACCTTTGCAAGAAACGAGAAGGAGAAGAGGCAATGTCGGCTACGTATTGGTGTCACA
TGTGTTCACAAACGGTGAATCCAGTCATTGATGCCGAGATCAAATGCCCCTTTTGCCAAAACGGATTCGTCTAGGAAATGAGCAGC
GGTGAGCTTAATGATGGCAGCAGCAGCAGCATAAGAGAGGTTCAAGATTCAGAGATCGATTTCGGTACAGAGGGTCCATTAGCTGA
TTTAGCTCTTTGGAGTCCAGTCTTACTTGGAATGATGAGCAGCAATCCTCGGAGACGTACAAGGTTTAGAGAGTTCGGATTCGATA
ATGATGAGGTCAATGTTGCTGCCGATGGAAATGAGAGCAATGTTGTTGATACTCATCATCGTCATCATCATCATAACCGTCGTCGT
CATCATCGCCACATGCATCATGATCATGATTCTATCACTAGGAGGAGACGGAGAAGCTCAGCTTCGATATTGCAGTTGGTTCAGGG
CCTTCGTGAAGTGATTAACACCGAGGATGAGCACTCCCAGTTTGTCAGAACCCGTTTAGCCCACTTGATTGAACATCTAGCTAATA
ACAACGATCCAATCAGGATCAGGCACGGGACTCTTCCAGCACGTAAGGAAGCAGTGGAGAATCTACCAACGGTTAAGATATGCGAG
CCGTTGCAGTGTTCAGTTTGTTTGGATGATTTCGACAAAGGAAGTGAAGCTACAGAGATGCCGTGTAAACACAAGTTTCACGTCGG
GTGTATAGTACCGTGGCTTGAGCTTCACAGTTCCTGTCCTGTGTGCAGATATGAACTACCTCCTGATGATGATGATGAGGTAAAGA
CTGATCTGGTAAGACCGAGAGCAACAAGTGTAGAAGAGATCAACACAAGTAATGAGAATGTGGAAGAGGATGCAAGGAACACTAGT
GGGAGCGAGAGAAGGTTCTCGTTACTGTGGCCGTTCAGCTGGTTATTCTCTTCCTCGGCTTCTTCATCCGGTTCAGGGTCGTTTCA
GCTGAATGAGAACTCAAGTTCAGGATAAAGGATTACAAATTAGAAACAAAAACTATCTCTGCCTCCCCCTTTCTCTTAGGTCACAG
TTCATCAGCTTGAAGTAAATCAAAATCTTTTAAACACTTTTGAGGAATGGAATGGTTTCTTTCTTTGTGTTTATATATCATCTTTG
TTAGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAA18230 putative protein [Arabidopsis thaliana] | 594 | 4e-059 |
| NP_194370 RING/U-box domain-containing protein [Arabidopsis thaliana] | 594 | 4e-059 |
| XP_002867566 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 588 | 2e-058 |
| NP_200445 RING/U-box domain-containing protein [Arabidopsis thaliana] | 488 | 8e-047 |
| XP_002864451 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 483 | 3e-046 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q3T0W3 E3 ubiquitin-protein ligase RNF181 | 213 | 3e-016 |
| Q9P0P0 E3 ubiquitin-protein ligase RNF181 | 211 | 5e-016 |
| Q0II22 RING finger protein 126 | 207 | 1e-015 |
| Q9BV68 RING finger protein 126 | 206 | 2e-015 |
| Q7ZW78 E3 ubiquitin-protein ligase RNF181 | 205 | 2e-015 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O65594 Putative uncharacterized protein AT4g26400 | 594 | 3e-059 |
| Q8L5Z3 AT4G26400 protein | 594 | 3e-059 |
| Q9FM98 Genomic DNA, chromosome 5, P1 clone: MCD7 | 488 | 6e-047 |
| B9GXX2 Predicted protein (Fragment) | 429 | 4e-040 |
| B9GLB5 Predicted protein (Fragment) | 424 | 2e-039 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G26400.2 zinc finger (C3HC4-type RING finger) family protein | 598 | 6e-062 |
| AT4G26400.1 zinc finger (C3HC4-type RING finger) family protein | 598 | 6e-062 |
| AT5G56340.1 zinc finger (C3HC4-type RING finger) family protein | 488 | 3e-049 |
| AT3G13430.1 zinc finger (C3HC4-type RING finger) family protein | 328 | 1e-030 |
| AT3G13430.2 zinc finger (C3HC4-type RING finger) family protein | 328 | 1e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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