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Information for unigene UN40896
| FASTA Sequence |
| Unigene ID: UN40896 | Length: 371 |
SSR | | ATATCTCAGCTCAGACAACCTCCGTTGAACAGGAGAGTGAGGAAAGAAGAGATGGTTGGGCACAAGATTGCACACGCAACCTTGAA
AGGTCCGAGTGTCGTGAAGGAGTTAGTTATAGGTCTTGCACTAGGGCTAGCAGCTGGTGGGCTATGGAAAATGCACCACTGGAACG
AGCAGAGGAAGACGAGAACATTCTATGATTTGCTTGAGAAGGACGAGATTAGCGTCGTTGTTGCAGAGTAGTAGTATTTGTAGAGA
GAGATAGAGATCTTCTCCTCCAACACTAAATATTTTGATGATGATGATGATTACTTCTAAATTTTAGCGTTTGTTATTAGTTTCAA
ACCTATCATATCATAGTTAATTCATTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABL97970 cytochrome-c oxidase [Brassica rapa] | 315 | 1e-027 |
| XP_002880298 cytochrome c oxidase subunit VC family protein [Arabidopsis lyrata subsp. lyrata] | 308 | 7e-027 |
| XP_002866426 hypothetical protein ARALYDRAFT_496289 [Arabidopsis lyrata subsp. lyrata] | 304 | 2e-026 |
| NP_182260 putative cytochrome c oxidase subunit 5C-1 [Arabidopsis thaliana] | 303 | 3e-026 |
| XP_002862722 cytochrome c oxidase subunit VC family protein [Arabidopsis lyrata subsp. lyrata] | 303 | 3e-026 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22912 Probable cytochrome c oxidase subunit 5C-1 | 303 | 9e-028 |
| Q9LZQ0 Cytochrome c oxidase subunit 5C-2 | 296 | 6e-027 |
| Q9FLK2 Probable cytochrome c oxidase subunit 5C-3 | 296 | 6e-027 |
| Q9SXX7 Cytochrome c oxidase subunit 5C | 274 | 2e-024 |
| Q42841 Cytochrome c oxidase subunit 5C | 271 | 5e-024 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A1YMW4 Cytochrome-c oxidase | 315 | 7e-028 |
| Q2HIR0 At5g61310 | 296 | 1e-025 |
| D6BR49 Cytochrome c oxidase polypeptide Vc | 281 | 6e-024 |
| B9RNE3 Cytochrome c oxidase polypeptide Vc, putative | 275 | 3e-023 |
| A3CIF7 Putative uncharacterized protein | 274 | 4e-023 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G47380.1 cytochrome c oxidase subunit Vc family protein / COX5C family protein | 303 | 1e-028 |
| AT5G61310.1 cytochrome c oxidase subunit Vc, putative / COX5C, putative | 296 | 7e-028 |
| AT5G61310.2 cytochrome c oxidase subunit Vc, putative / COX5C, putative | 296 | 7e-028 |
| AT5G61310.3 cytochrome c oxidase subunit Vc, putative / COX5C, putative | 296 | 7e-028 |
| AT5G61310.4 cytochrome c oxidase subunit Vc, putative / COX5C, putative | 296 | 7e-028 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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