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Information for unigene UN40914

FASTA Sequence
Unigene ID: UN40914Length: 653 SSR 
TTTTTCTTCTTCTTTCAATTTCGTTGTCTCGATTCTTCTTCAAACCTTAGGAGATGCGAGTTATGTTTTGATTTCGCGTAGATGGC
ATCGAATCCTTACAGAGGCGGTGCGGCTCCGTACAGATCCGGAGATGGGCTTAGCACTAGAACCGGTACTGGGTCAGAGGAAATCC
AGCTAAGGATTGATCCCATGCCCTCTGACCTAGACGATGAGATCACTGGTCTCCATGGTCAAGTCAGGCAATTGAAAAATATTGCT
CAAGAAATTGGGTCAGAAGCGAAGTTTCAGAGGGACTTCTTAGATGAGCTGCAAATGACATTGATGAGAGCGCAAGCAGGAGTGAA
GAACAATATACGGAAACTAAACTTGAGCATCATACAGAGTGGCAACAATCATATCATGCATGTGGTTCTTTTCGCGCTATTCTGCT
TCTTTATCCTCTACCTGTGGTCGAAGATGTTCAAAAGATGAAAGACTCATCATCGTATTTGATGCTCTACCCCCCGGAAGAATACT
TGATGAAAATGTTGGAAAGCTGTAGAGATATCTTTTAGTTGCAGACATTCTTGTGTGATTCTTCTCGTTCGCTGTTATATATATAT
AGTGCTTATTTTGAACACATTCATAAAAGCAAAAACAAGATTATGTTACCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002870304 hypothetical protein ARALYDRAFT_355343 [Arabidopsis lyrata subsp. lyrata]5627e-056
NP_567434 protein transport protein SFT1 [Arabidopsis thaliana]5611e-055
NP_564319 protein transport protein SFT1 [Arabidopsis thaliana]5457e-054
XP_002890789 hypothetical protein ARALYDRAFT_890426 [Arabidopsis lyrata subsp. lyrata]5431e-053
XP_002306555 predicted protein [Populus trichocarpa]4775e-046

Swiss-Prot top hits (Blast detail)Scoree value
Q8VXX9 Bet1-like protein At4g146005615e-057
Q8L9S0 Bet1-like protein At1g290605453e-055

TrEMBL top hits (Blast detail)Scoree value
Q1H5G7 At1g290605455e-054
B9H6Y2 Predicted protein4774e-046
C6T099 Putative uncharacterized protein4756e-046
C6T1H3 Putative uncharacterized protein4641e-044
B9GV17 Predicted protein (Fragment)4372e-041

Arabidopsis top hits (Blast detail)Scoree value
AT4G14600.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29060.1); Has 95 Blast hits to 95 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 19; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).5623e-058
AT1G29060.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14600.1); Has 95 Blast hits to 95 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 15; Plants - 47; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).5462e-056

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
84  100%

Unigene MembersMember information