 |
Information for unigene UN40936
| FASTA Sequence |
| Unigene ID: UN40936 | Length: 1031 |
SSR | | GGAGAGAAAAAATAACGCTCTCTCGTCTCCTTCTGCAGCCCTAATTGCATCTCCACCCATTATTTCCGTTACTGTTATCTCAATCA
TCTCAGAGATGCCAATCATGCTCTAATAATGATTCTTTCGCCACGCCGTTACTGCGACCATTATTTCCGACTGTTATCTCAATCAT
CTCAGAGATGCCAATCATGCTCTCTCGTCTCCTTCTGCAGCCCTAATTGCATCTCCTCCCACACTCCTTGGCTCTGCGAATCCCTT
CGCCGCCTTCACCAATCATCCTCCTCCGCCAACAGTTGTTCAGTTTCAAGTTTGGTTCTCCGGCGAGGTCTGTGGATTTTGCTCTT
GGAGATAAGGTTGCGGTTATTACCACTGACCCCTTCATGGAGCGTATTTCTGCTATTACTGTGTTGATGCGTTGTTGCATAAGAAT
ACAATCACATCGCTCACTAAAGCAGCTGATGATTCTCACTTCATTACTGGTTCACTTGACAAGACTGCAAAGCTGTGGGACATGGG
AACATTGACTCTTCTCAAGACTTACGTTTCAGGGGTGCCTGTAAATGCCGTCTCCACTTCTTGACCATGTTGTGCTTGGAGGTGGT
AAGATGCAGCAGCTGTTACAACCACTGATCATCGTGCTGGGAAGTTCGAGGCTAAGTTTTATGACAAGGTTAGAAACAGAAGAGGG
AAGCTTCATATACTTTACCTTCAAGACATGACTCATGAGCAACTGTGCCTTCTGGCTTAGAAGCACAGGGACCTGGAACATTGCGT
TATGTCTGTACGAGCATAGATCGGGAGGTGTGGGAGCTGGAGGGACAATTTTCCTTGTCTTTTCCTCTAGTTTCGTAAAAAGTCTG
TCTCATGAGTCAAACTATATCTTTGATATAATAATAATAATACTCATGAATTTCATCACTAATATTATGACTCTCTATAGACAATT
ATTTCATTTACAATTTGAAGAATTTGTAAATGTTTTGCAGGATATTCCAATGACTTTGCCCATGACTTTGTTCATTTGTTTGCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_182151 translation initiation factor 3 subunit I [Arabidopsis thaliana] | 296 | 1e-024 |
| AAK43862 eukaryotic translation initiation factor 3 delta subunit [Arabidopsis thaliana] | 296 | 1e-024 |
| AAG53616 eukaryotic initiation factor 3I1 subunit [Arabidopsis thaliana] | 296 | 1e-024 |
| BAH19940 AT2G46280 [Arabidopsis thaliana] | 296 | 1e-024 |
| XP_002882056 TGF-beta receptor interacting protein 1 [Arabidopsis lyrata subsp. lyrata] | 294 | 2e-024 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q38884 Eukaryotic translation initiation factor 3 subunit I | 296 | 5e-026 |
| Q9ZUM9 Histone-lysine N-methyltransferase ASHR2 | 242 | 1e-019 |
| Q5KNN8 Eukaryotic translation initiation factor 3 subunit I | 158 | 5e-010 |
| Q2UQ34 Eukaryotic translation initiation factor 3 subunit I | 141 | 5e-008 |
| Q5B8Y3 Eukaryotic translation initiation factor 3 subunit I | 138 | 1e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9DGS3 AT2G46280 protein | 296 | 8e-025 |
| Q0WVZ3 Eukaryotic translation initiation factor 3 delta subunit | 296 | 8e-025 |
| B9S7C0 Eukaryotic translation initiation factor 3 subunit, putative | 280 | 6e-023 |
| O82341 Eukaryotic translation initiation factor 3 delta subunit | 279 | 8e-023 |
| Q8GWC2 Putative eukaryotic translation initiation factor 3 delta subunit | 279 | 8e-023 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G46280.1 TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding | 296 | 5e-027 |
| AT2G46280.2 TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1); nucleotide binding / protein binding | 296 | 5e-027 |
| AT2G46290.1 eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative | 279 | 4e-025 |
| AT2G19640.1 ASHR2 (ASH1-RELATED PROTEIN 2) | 242 | 9e-021 |
| AT2G19640.2 ASHR2 (ASH1-RELATED PROTEIN 2) | 242 | 9e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
