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Information for unigene UN40948
| FASTA Sequence |
| Unigene ID: UN40948 | Length: 1991 |
SSR | | CTCTCTCTCTCTCTCTAATTCTCTCAGGCTCTTATTTCTTTTGGATTTGTTTACTTTACATAACTCATAAGTGTTCGTTCGAGATT
TGTCGGAGAAATTTTCGGTAATAATGTCGAGATTTGTGGGAATTTTTTAAATAAAAAGAGAGGTTGTAATATTTTTTTATTTTGAT
ATTTGAAGAAACAGAATCTTCAAAAAAATTGATATGTGCTCTTTTCTTGGGATTTGAGTTATCAAGAATCTGTTGAATTCTCTCAT
AATTTTTCCTTGTAATTTCCATTATGTCGGAATCTGAGAAAAAGGAAGACGGAGAGATCTACCGGAATATTCCCCGACCAATCTCT
AGAGATCTGTTGCAGAGTTTCATGTCCAAGAAAAACAAGAACCCGTCGGTTGAAGACGGAGAGGTAGAGGTTGAGCTAGACTTAGG
GCTTTCTCTCAACGGTAGGTTCGGTGTTGACCCACTAGCGAAGACCAGGCTGCTCACGCGGTCTTCTTCGATTCCTGATTTCGTGG
TCAACGATCATAGATCGGAGCTGAGTAGGACTTGCTCGTTGCCGGTTGAGACGGAGGAGTGGAGGAAGAGGAAAGAGTTGCAGAGC
TTGAGGAGGCTCGAGGCCAAGAGAAAGAGGTCTGAGAAACAGAGAAACGTGAGAGTGCTTAGGGAGAAACAGAAATCTGGAGGAGT
AGAAGAGAAGATTGTTGAAGAAGGATCTATAGGTTCTTCTGGGAGTGGTTCTTCTAGTTTGTCCGAACTCGACACCTCTCCTCCTC
CTCCTGTTCAAGCAATAACAAACAAGCCGATAGACACAAGCCCACCAAGTGATGCCCCGGCTGCCAGAAACATCATAGAAGACATG
CCGTGCGTGTCAACGACAGGAGATGGACCGAACGGGAAAAAGATCGATGGGTTTCTGTATCGGTACAGGAAAGGCCAGGAGGTTAG
GATCGTGTGCGTGTGCCACGGAAGCTTCCTCTCGCCTGCAGAATTCATTAAGCACGCCGGTGGCGGTGACGTGGCGCATCCCTTGA
AGCACATCGTTGTAAATCCATCTCCCTTCTTGTGACCATTATTATGGTCCAGTTTCTGTTTACTAAATTGTTGTGTATCCATTCGG
ATTACAAGTTTGCATATCTCGAGGTGTATAAACATTTCAAGTTTGTTTTGAACGTAAAAGATATCATCTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGGGGGGCTCAAGCTTTCTCTCTCCGTCTTCGCTCTCTTTCTCCTCGTCATCGTCTCCGCTTCCTCCGACGGC
GATGATCTCGTGATCAGGCAGGTGGTTGAAGGAGGAGCCGAGCCCAAGGCTCTGTCCTCGGAAGATCACTTCTCTCTCTTCAAGAA
AAAGTTCGGCAAGGCTTACGCGTCCGTCCAAGAGCACGACTACAGATTCTCCGTATTCAAAGCCAACCTCAGGCGAGCGAGGCGCC
ACCAGAAGCTTGACCCCTCCGCTCGCCACGGCGTCACGCAGTTCTCGGATCTGACTCAGTCAGAGTTCAGGGAGAAGCATCTCGGT
GTTAAAGGAGGCGGGTTTAAGCTCCCCAAGGACGCCAACAAGGCTCCCATCCTCCCTACCGAGAATCTCCCCGAGGAGTTTGATTG
GAGAGATCGTGGCGCTGTTACCCCCGTCAAAAACCAGGGATCTTGCGGTTCTTGTTGGAGTTTCAGTGCAACCGGAGCTCTGGAAG
GTGCTAACTTCCTCGCTACCGGCAAGCTCGTCAGCCTTAGCGAGCAACAGCTTGTCGACTGTGATCACGAGTGTGACCCAGAAGAG
GCAGGTTCATGCGACTCTGGTTGCAACGGTGGCCTCATGAACAGCGCTTTTGAGTATACACTCAAAACCGGAGGGCTCATGAGAGA
AGAAGACTATCCTTACACCGGAAAGGACGGTCCTACTTGTAAGCTAGACAAGTCCAAGATCGTTGCGTCCGTCTCCAACTTCAGCG
TCATTTCCATCGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAL60581 senescence-associated cysteine protease [Brassica oleracea] | 1220 | 2e-131 |
| BAJ33785 unnamed protein product [Thellungiella halophila] | 1201 | 3e-129 |
| XP_002868883 hypothetical protein ARALYDRAFT_490677 [Arabidopsis lyrata subsp. lyrata] | 1188 | 1e-127 |
| NP_568052 cysteine proteinase RD19a [Arabidopsis thaliana] | 1163 | 9e-125 |
| AAM65162 cysteine proteinase RD19A [Arabidopsis thaliana] | 1158 | 3e-124 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P43296 Cysteine proteinase RD19a | 1163 | 4e-126 |
| P43295 Probable cysteine proteinase A494 | 1096 | 2e-118 |
| P25804 Cysteine proteinase 15A | 884 | 8e-094 |
| Q94F39 Ninja-family protein AFP3 | 868 | 6e-092 |
| Q10716 Cysteine proteinase 1 | 816 | 6e-086 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W179 Senescence-associated cysteine protease | 1220 | 1e-131 |
| Q0WWF3 Drought-inducible cysteine proteinase RD19A | 1163 | 6e-125 |
| Q8LAT5 Cysteine proteinase RD19A | 1158 | 2e-124 |
| Q058I7 At2g21430 | 1096 | 4e-117 |
| Q680L1 Putative cysteine proteinase | 1088 | 3e-116 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G39090.1 RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type endopeptidase/ cysteine-type peptidase | 1163 | 3e-127 |
| AT2G21430.1 cysteine proteinase A494, putative / thiol protease, putative | 1096 | 2e-119 |
| AT4G16190.1 cysteine proteinase, putative | 899 | 1e-096 |
| AT3G29575.1 AFP3 (ABI FIVE BINDING PROTEIN 3) | 869 | 4e-093 |
| AT3G29575.3 AFP3 (ABI FIVE BINDING PROTEIN 3) | 869 | 4e-093 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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