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Information for unigene UN40952

FASTA Sequence
Unigene ID: UN40952Length: 1085 SSR 
GGGGAACGCCTCCAAGGTAAACAAGACGCTCCTACCGACTCAGCCCGAGTCACCCTATTCTCTACCCTGACTCAAAACTCAAATGA
ATTGTGGTGAAACCAAATTCGAAGCGACGAGCACCAATCAGAGACTCAAAACCAGAGGAAGGAAGAAGAAGACGAAGACGACAACG
AAGGACCCAAACAAACCGAAGAGACCTCCAAGCGCCTTCTTCGTCTTCCTTGATGATTTCCGACGGGAGTTCAACGAGGTGAACCC
TAATACCAAGTTGGTAAGGCTGGTGGAGCTAAATGGGAGTCAATGACTGAGGAAGAGAAAGCACCTTACGCTTCCAAGGCAGAGGG
CAGGAAGAGTGAGTATGCCAAGAGTATGCAGCAGTACAACATGAAACTGGTATTATAAGCTTTTCACGTCCAAGTGTGTGTGTGTG
TGTGTTTGGTGTTACTGTGTGTTTTAGTCTAGTGGAACCAATAGAGGTGAAGATGATGAATCCAATTTCATGATATGCAACGTGCG
GCAGAACTGAGAATCGTTCTCAACCAGCCAGCGGCTGCCTTGTCTAGTAGACATACTAACCTGGGGTCTGGTTCTGGTGGCTGGAG
CTCGTCTTAGGAGAAGGATGAAGTAGATCCAATGGATCAAGATGATGAAGATGGGGATGGTGAGAAAAACGCACGTTTCAACGAAC
ACAGAAGAGTACATTACAATGAGTTTTGGTAGGTGAAGGAACTGAGGTCATCAGGTTGACAGAGTCGTTCTATGTAGAAGAAGAGG
AAGAAGATGATGGCGAAAGGCAGTAAATCAGAGGCAACAACCTCACGTCACACTACCAAAGACGTTAACAAATAGTTAAATGCAAC
CACGAGAGTTTCATCCTCGAGTTGATATCAACCTCTGCTAAATCAAATGTGTACTCTCCTCTATGTTTAACAGAGTTACCTCTCGA
TTAGTCAAATCAGTTTATTAGAAATTAATTTATATACCTTTATATTATGAAATTGTTTTTGCATCCTGTTTTCATGTAACTTTTTC
CTCTTCATTCATCAATCAAAAAGACGGTTGTCGCCACTGGACGACGAAATGGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002865901 hypothetical protein ARALYDRAFT_918263 [Arabidopsis lyrata subsp. lyrata]3141e-026
NP_568768 phosphoprotein phosphatase inhibitor [Arabidopsis thaliana]3005e-025
NP_001190518 phosphoprotein phosphatase inhibitor [Arabidopsis thaliana]3005e-025
AAM64404 putative HMG protein [Arabidopsis thaliana]2315e-017
NP_179347 high mobility group B4 protein [Arabidopsis thaliana]2306e-017

Swiss-Prot top hits (Blast detail)Scoree value
P40619 HMG1/2-like protein1693e-011
P40620 HMG1/2-like protein1461e-008
P27347 DNA-binding protein MNB1B1461e-008
P26585 HMG1/2-like protein1442e-008
P40621 HMG1/2-like protein1326e-007

TrEMBL top hits (Blast detail)Scoree value
Q9LTK0 AT5g52200/F17P19_103003e-025
Q8LCY0 Putative HMG protein2313e-017
B9DG70 AT2G17560 protein2304e-017
Q42344 HMG1-like protein2304e-017
Q94K96 Putative HMG protein2304e-017

Arabidopsis top hits (Blast detail)Scoree value
AT5G52200.1 unknown protein3002e-027
AT2G17560.1 HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor2302e-019
AT2G17560.2 HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor2302e-019
AT2G17560.3 HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor2302e-019
AT4G35570.1 HMGB5 (HIGH MOBILITY GROUP B 5); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor1872e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  40%
 
103  60%

Unigene MembersMember information