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Information for unigene UN40953
| FASTA Sequence |
| Unigene ID: UN40953 | Length: 1007 |
SSR | | CGTATTAAATTATTGATGTTATAAAAACAGAACATGTAAAGTTACAAAAATCTCAAATAGTTTAAAAGAAAAAGTTCAAATATCGC
TCATGATAAAACACAGCCTAAAGATCATTTCTCACTTGAAAAGAGAAATACAACAATACATCTGTTTGTAACTGTATGTATCCACA
CAAACTTTTGCTGTCGTGTAAACCTCCTCTTATCTTAGTTTTCTTAAACCTTGAACTCATGGACGTGGAACCATTTCGTGGATGAC
CATTTGTTTCCTTTCACCACTGGGCATCCACCGTGCAAACTGGAAGGGTCTAGAGAGGCATCAGGTCTCATGTTCCAGAAAAGTAA
AGCATCTCTCTTCTTTGGTAGAACAGAGAGTCCTTCTTTGCCACATTTCGAGAGCTGGTCCCACCATGGGACTGCACTAATGTTTC
CTTTTGCTGCTGGGAACACGGTCTCGCCACCATCATCAACATCCGAGAGGTACATAAGAACAGTGGCTATTCGTTGTCCTCCGTTC
TTGGTGTTGAACTCATCTAAGAAATAATCATAGTGAGGCTCATACTTCTACCCAACTTGGTAGTGAAGAACCTGAAGGCCTTCTCC
ATTTTCAACAGGAATGAAGGTGAAATCAGAAATCCTTTGCTCAATCCTCTCGACAACTTGGTCATGTCCTCTTTTAAGAAAAGTCC
CAGAGCTAGTCCTTACTCTGCTATCTTTGCTGCCACCGGTTTTCTCATCGACCACAGTTGATTTAACCATGTTGGGTTTAGCGAGG
CTGATGAGGTGCTCACATTCTTCATTGGTCAAGAAATTGTGGTAAACAACAGCTCTAGGCTCCCACGATATCACTTCAACCCAACG
CTCTCCGTTCCCTTCCTCCTCCTCTCCTCCATAACTCTCATCCTGGCTCTTCCGCACAATGTTGGTCAAATCGTTGGGCTTGGAAG
AGTTTCTCTCTCTCTCTCTCTCTCAAGATCTAAATGATTAACATTGAAGAAGATGAGTCCC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_179363 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] | 1212 | 7e-131 |
| AAM65040 putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana] | 1206 | 4e-130 |
| XP_002884079 oxidoreductase [Arabidopsis lyrata subsp. lyrata] | 1206 | 4e-130 |
| XP_002869059 oxidoreductase [Arabidopsis lyrata subsp. lyrata] | 1107 | 1e-118 |
| NP_195306 oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] | 1089 | 1e-116 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P54001 Prolyl 4-hydroxylase subunit alpha-1 | 259 | 1e-021 |
| Q5ZLK5 Prolyl 4-hydroxylase subunit alpha-2 | 258 | 1e-021 |
| O15460 Prolyl 4-hydroxylase subunit alpha-2 | 253 | 5e-021 |
| Q60715 Prolyl 4-hydroxylase subunit alpha-1 | 252 | 7e-021 |
| Q60716 Prolyl 4-hydroxylase subunit alpha-2 | 251 | 8e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q24JN5 At2g17720 | 1212 | 5e-131 |
| Q8LB05 Putative prolyl 4-hydroxylase, alpha subunit | 1206 | 2e-130 |
| A5AE53 Putative uncharacterized protein | 985 | 1e-104 |
| C6TM81 Putative uncharacterized protein | 984 | 1e-104 |
| B9SXB7 Prolyl 4-hydroxylase alpha subunit, putative | 977 | 9e-104 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G17720.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1213 | 2e-133 |
| AT4G35810.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 1089 | 5e-119 |
| AT5G66060.1 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1008 | 1e-109 |
| AT1G20270.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 940 | 1e-101 |
| AT3G28480.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein | 614 | 6e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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