Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN40982

FASTA Sequence
Unigene ID: UN40982Length: 1113 SSR 
GGATTACAAACACGCCAGAACTCTATTTGCTTCCAAACCTCGCTTAAAGGGTCTCTCTGTATTCATCTTTCTGTCACAATTCTGAA
AAAAAAAATTGAAGCTTGATTTGGTTCAACAGAGAGAGAGAGAGAGAGAGAGATAAAGCAGAGATGTGTAGTTTGTCAGCGAACAT
GTTGTTACCAACAAAGCTGAAACCTGCTTATTCAGACAAACAGAGTTATTGTACCACCAACTCACTCCTTGTCTCCAACACAAGAC
CCAAGAGGAAGAAGAACCAATCCACTGTTCCTATGGCAAGATTGTTTGGACCAGCTATCTTCGAATCATCCAAGCTGAAAGTATTG
TTTCTAGGGGTTGATGACAAGAAGCATCCACCAACGCTCCCAAGAACTTACACTCTGACTCACAGTGACATTACAGCTAAACTAAC
TCTAGCTATTTCTCACTCCATTAACAATTCTCAGTTGCAAGGATGGGCAAATAGGATATACATAGATGAAGTGGTAGCAGAATGGA
AAAAAGTGAAAGGGAACATGTCTCTTCACGTCCACTGTCACATTAGCGGTGCCCATTTCCTCTTAGATCTCTTCCCAAAGTTTAGA
TACTACATCTTTTCCAAAGAACTACCCGTTGTGTTGAATGCTATTGTTCACGGAGATGGCAACCTGTTGAACAGCTATCCCGAGTT
ACAAGAAGCTCTTGTTTGGGTTTATTTCCATTCTAATGTCGATGAGTTCAACAGAGTCGAATGTTGGGGTCCGCTTTGGGAAGCTA
CTTCGCACGATGGTCACAGGACTCAGACTCTCCCTGAGACTCTGTGCAAGGAGGAGTGCGGTTGTTGTTTCCCAACTGTTAGCTCC
ATTCCTTGGTCTCATAGTCTTACTAACGAAGGTGTTACAGACTACCCTGGGACTCAGGCCGAGGGAATGTCTACTCCAAGTCCGGA
GAAAATCTAGTGATTCAACTAATATACAAGTTTCTTTTTAGTGAAATCTTTTGTAGATCTAATATTGGTCTGGTTTGGTTTAGTGT
ACATGATGTGGTATAGGAAAATAATGATTACTAGATTTTTACCCGCACGCCCGTGCGGATGTATATTTCAAAAATATATTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_567673 non-yellowing protein 1 [Arabidopsis thaliana]11922e-128
XP_002867744 hypothetical protein ARALYDRAFT_492573 [Arabidopsis lyrata subsp. lyrata]11912e-128
AAM64476 unknown [Arabidopsis thaliana]11869e-128
ADA58359 non-yellowing protein 1 [Brassica rapa subsp. campestris]10381e-110
NP_001118967 uncharacterized protein [Arabidopsis thaliana]9152e-096

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O82741 Non-yellowing protein 111921e-128
Q8LBZ2 Putative uncharacterized protein11866e-128
D2KKB5 Non-yellowing protein 110389e-111
B3H593 Uncharacterized protein At4g11911.19152e-096
Q66WT5 Non-yellowing protein 29098e-096

Arabidopsis top hits (Blast detail)Scoree value
AT4G22920.1 NYE1 (NON-YELLOWING 1)11935e-131
AT4G11911.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: NYE1 (NON-YELLOWING 1) (TAIR:AT4G22920.1); Has 130 Blast hits to 128 proteins in 45 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).9363e-101
AT4G11910.1 INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: NYE1 (NON-YELLOWING 1) (TAIR:AT4G22920.1); Has 130 Blast hits to 128 proteins in 45 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).9311e-100
AT1G44000.1 unknown protein4372e-043

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  50%
 
101  50%

Unigene MembersMember information