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Information for unigene UN40986

FASTA Sequence
Unigene ID: UN40986Length: 1083 SSR 
GGAAATCCCTGGAACTGGAAAAAAATATCTTTATCGCCTCCCGAAAAACCTAGCACAGTCGCCATGGACGAATCCGGCAACAAAGG
TATGGAGTTGAACTGTCGTGATGCTAAGATTCGAAAAAGCAGCATTAGCAGGATTTCGGTCGAGGGATACGACACCTCCCTTCGTA
GGGCAGATGTCGATGGTGCTTTGAGAGAACACTTCGCTTCATGTGGAAACATAATACATGTTTATGTTCCCGTTCCCTTAGACGTA
GACGTTAACGGTGTTATTCTCTGCAGATATTCCTTAATTTATGTTAATGAAGAAGATGAAGAAAAGGCACTGAAGCTTGATGGAAG
TGACATGGGAGGACGGATTTTACAAATTAACCCTTACCCGTTCCACGAAAATCACCTTGATGATTACTTGGCTCCTATGAAAGAAG
GCGAATTCTTTCTGCCACAACACACGATAATGGTTAAGGATTTTGAGTCTTCCCTTCCTATCGATGTTATCATGGAGCAGCTTGAT
AAATATTTCTCTTCAAAAGGTTCTTTTGTTTACCAAGACGTAACCGCTTCTGGTGCTATCAAAACCGTAGCCAGATTTTATGTCCG
TGGACAAGAGGGTGTAGACACGGCGCTTGAACGTAGTGGACGTTCTGTTGAAGGTTTGTATTTTGTAGTTACTCGGGTTGTTCCAG
TTCCAGCAAAAATACGCCCGACTGGCTACTGTCACCCAAATAACTTTATAGAAGATCCAAATATTGCGGAGAAGAGAAGTCAGAAG
AAGAAGAAGAAGAAGAGCAAGACTACAGAGAGAAATCAGTCGAAGAAGAAAGAGAAGAAGAGGAAGTCAATATTTAACACCTGCTT
CTTTCTTTAAGCCAATATCTCTCAATCTATCTAACACCTGCTTCTTTCTTTAAGCCAATATCTCCCATAGCCTAGCAGCATCATCA
AGTCTGCCGAGAATGATCTCGATACATGTTTGAGATAGCATCACAAAATTAGCTCCGTTTCTCGGTTCAAGCTTTGACCAATTTGT
TTCAGTTAACTTTACTCGCTTGACTAAGGAGCAGATAGAAGATCCAAATCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883446 predicted protein [Arabidopsis lyrata subsp. lyrata]3363e-029
XP_002873094 predicted protein [Arabidopsis lyrata subsp. lyrata]3005e-025
XP_002893783 predicted protein [Arabidopsis lyrata subsp. lyrata]2862e-023
BAB09542 unnamed protein product [Arabidopsis thaliana]2557e-020
NP_200181 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]2557e-020

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q5BPG8 Putative uncharacterized protein2555e-020
Q9FI06 Emb|CAB83308.12555e-020
Q5XUZ6 Putative uncharacterized protein2547e-020
Q67YA0 Putative uncharacterized protein At5g035002547e-020
Q9LZD6 Putative uncharacterized protein F12E4_280 (Fragment)1973e-013

Arabidopsis top hits (Blast detail)Scoree value
AT5G53700.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).2553e-022
AT5G03495.1 nucleotide binding2544e-022
AT3G09160.1 RNA recognition motif (RRM)-containing protein1854e-014
AT5G03480.1 nucleic acid binding / nucleotide binding1792e-013
AT1G48920.1 ATNUC-L1; nucleic acid binding / nucleotide binding1513e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  50%
 
122  50%

Unigene MembersMember information