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Information for unigene UN40988

FASTA Sequence
Unigene ID: UN40988Length: 877 SSR 
CAAATAACTTCACCTTCATTTAATTTAAGAGTATCAAAACATTGCTTGACCAACAAGCCACAATTAAAAACCAAAAACAATCTGCA
GAGAGAAGCAAAGCTTCCCATATTCTGCTAAACATTACATCTCTCATGAAGCTTCTGAGAGATTTTTATCAAAATTAAAAAAAAAC
AAATAAAAGGAGAGATCTTCACATATGAACATCACACCAAACAAGAACACTAGTACTTTTTCCCAAGAATTATACCGATGATAACG
GAGATCAAAGCTACTCCAGAGACGATCTTCAGTGTCATGAGATGAGAAGTTGTCGCCGTCTGAGTAGCGGTTACGTTGCTCGAAGA
AGAAGAAGAAGGAGACGCCTCTGACTTCTTCTTGCTCGTACGTTTCGTTGGAGATGAAAAGGACAAGTCAACGTCTCGAGATTTAA
TAACTACATCCTTTGCCTCCGTTTCCTTAGCTTTAGCATCCGCGAGCTGCACTTTCTGTTCAAGATCTTTGACCATCGATTCAAAT
TCAGTGACTGCCTTTTTCTTAGTTTCAATCTCTTCTTGTGACTGCTTTAGTGCAGCCTCCAGCTCTGAATGCTTCTGGGAGTGTGC
TTGTTTCTGTTCAGCAATAGAACTCTGAGCCGCTTGAAGCTCTTTCTGAAGCTGAAGTACTTTCTCATTGAGCACATCTCGGTCAC
TAGCGATATGTTCGTCTTCCTGTAGCTTTGAGGTCAGTTCGGCCACTTTTACAGACGCAGCCGTTGCATTTTCGACCTCTTCTTTC
AACTGAGCTTCGAATTTTTTCAAAGTCTTTTCAAGTTCTTCAACATGTGCTTCTAAAACAGATTTTTCAGCAGCCACAGCCTTGAG
CTTCTCAATTTCGGACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAL09731 At2g32240/F22D22.1 [Arabidopsis thaliana]8514e-089
AAM15156 putative myosin heavy chain [Arabidopsis thaliana]8514e-089
NP_565741 uncharacterized protein [Arabidopsis thaliana]8514e-089
NP_001030972 uncharacterized protein [Arabidopsis thaliana]5423e-053
BAH57201 AT1G05320 [Arabidopsis thaliana]5423e-053

Swiss-Prot top hits (Blast detail)Scoree value
Q8MSS1 Protein lava lamp1333e-007
P32380 Protein NUF11291e-006
P08799 Myosin-2 heavy chain1218e-006
P17536 Tropomyosin-11218e-006

TrEMBL top hits (Blast detail)Scoree value
Q8S8J6 Putative myosin heavy chain8513e-089
Q93ZJ6 At2g32240/F22D22.18513e-089
C0Z3C2 AT1G05320 protein5422e-053
A5BUC9 Putative uncharacterized protein5082e-049
O23037 YUP8H12.6 protein4992e-048

Arabidopsis top hits (Blast detail)Scoree value
AT2G32240.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 221693 Blast hits to 95553 proteins in 2574 species: Archae - 2848; Bacteria - 44259; Metazoa - 97474; Fungi - 15490; Plants - 8386; Viruses - 1229; Other Eukaryotes - 52007 (source: NCBI BLink).8521e-091
AT1G05320.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 205658 Blast hits to 89336 proteins in 2499 species: Archae - 2336; Bacteria - 33619; Metazoa - 92986; Fungi - 14305; Plants - 7441; Viruses - 1151; Other Eukaryotes - 53820 (source: NCBI BLink).5439e-056
AT1G05320.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 205658 Blast hits to 89336 proteins in 2499 species: Archae - 2336; Bacteria - 33619; Metazoa - 92986; Fungi - 14305; Plants - 7441; Viruses - 1151; Other Eukaryotes - 53820 (source: NCBI BLink).5439e-056
AT1G05320.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 205658 Blast hits to 89336 proteins in 2499 species: Archae - 2336; Bacteria - 33619; Metazoa - 92986; Fungi - 14305; Plants - 7441; Viruses - 1151; Other Eukaryotes - 53820 (source: NCBI BLink).5439e-056
AT5G41790.1 CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding1191e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

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