Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN41002

FASTA Sequence
Unigene ID: UN41002Length: 579 SSR 
GGAGCTAAATCACACCAAAACCCTAATCTCTCAAATCTTCCCCCAAACACCAAAAGAAAAAAAATGGTTAACCCTAAAGTTTTCTT
CGACATGAGCGTCGGCGACAAACCCGCCGGCCGCATCGTGATGGAGCTTTACGCCGACACAACCCCCGAGACCGCCGAGAACTTTG
TCAAGAAACACACCGGTCCGGGCATCCTGTCCATGGCCAACGCTGGTCCGAACACGAACGGATCTCAGTTTTTCATCTGCACTGAG
AAGACGTCGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAGGTTGTCGAAGGGATGGATGTCGTTAGGAACATTGAGAAGGTTGG
ATCTGACAGTGGAAGGACCTCGAAGAAGGTTGTGATCGCTGACTGTGGTCAGCTTTAGATCTGGTGATGAGAAAGTGAGAGAGAGA
GAGAGGTTGATCCAATGGTAGCTTTGTGTTTTTTCTGTTGTGTTGTTTTTTCTTTGTTCCCGGTCTTCTCTTCTTCGTTTCGATCT
TTGTGTTTCTGTGGCTACCATTGAATAATAATGATAATGATTAATCTTAGTTATTAATGCTCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
P24525 RecName: Full=Peptidyl-prolyl cis-trans isomerase; Short=PPIase; AltName: Full=Cyclophilin; AltName: Full=Cyclosporin A-binding protein; AltName: Full=Rotamase3896e-036
AAA62706 cyclophilin [Brassica napus]3896e-036
NP_179251 Peptidyl-prolyl cis-trans isomerase CYP19-1 [Arabidopsis thaliana]3861e-035
NP_001077901 Peptidyl-prolyl cis-trans isomerase CYP19-1 [Arabidopsis thaliana]3861e-035
XP_002884009 hypothetical protein ARALYDRAFT_899976 [Arabidopsis lyrata subsp. lyrata]3852e-035

Swiss-Prot top hits (Blast detail)Scoree value
P24525 Peptidyl-prolyl cis-trans isomerase3893e-037
Q38900 Peptidyl-prolyl cis-trans isomerase CYP19-13867e-037
Q39613 Peptidyl-prolyl cis-trans isomerase3795e-036
P34887 Peptidyl-prolyl cis-trans isomerase3714e-035
Q8W171 Peptidyl-prolyl cis-trans isomerase 13671e-034

TrEMBL top hits (Blast detail)Scoree value
Q6TMX3 Peptidyl-prolyl cis-trans isomerase3832e-035
Q96416 Peptidyl-prolyl cis-trans isomerase3823e-035
Q96417 Peptidyl-prolyl cis-trans isomerase3805e-035
C7EW65 Peptidyl-prolyl cis-trans isomerase3752e-034
B3FNQ1 Peptidyl-prolyl cis-trans isomerase3742e-034

Arabidopsis top hits (Blast detail)Scoree value
AT2G16600.1 ROC3; peptidyl-prolyl cis-trans isomerase3867e-038
AT2G16600.2 ROC3; peptidyl-prolyl cis-trans isomerase3867e-038
AT4G34870.1 ROC5 (ROTAMASE CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase3652e-035
AT4G38740.1 ROC1 (ROTAMASE CYP 1); peptidyl-prolyl cis-trans isomerase3491e-033
AT2G21130.1 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase3445e-033

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  100%

Unigene MembersMember information