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Information for unigene UN41015
| FASTA Sequence |
| Unigene ID: UN41015 | Length: 1301 |
SSR | | CCTTCAAGGATGATGCATACATGTATAAACCTTGTCCAAGCAAAACAATAATATACATACATATGTTCCTCTACATAAAGCTAGCC
TCCTCAAGCCTACACCATCACATGGATCACACAACGAGGCTAATACAAAGATAAATTAAGAAACAGCTTGACTCAATCCAAAAATA
CGAATATACACACATGCTTCAATATTCAAAAGACAAAAACCATATACATAGAGGATGTTAACCAACCCATTTACCATACAGCATCA
CTATCTCCTTATATGTCTCTTCCTTCGCTCATAGTCTACATCATCTGTAGGCAACTCATAACGACAAACAGGACACGTGTTCCTCG
TTTCGAGCCACGGTACAATGCATTCTCCATGGTACTTATGGTTACAAGGCAACAGAAGAACAGCTTTGCTCCCGATGCTCATCTCA
TCTTTACAAACCGCACAGTCACCATTCTCAACATCCAGCTGAACAACCACTGGGAGGTTCTTGATGAAAGATTCGGAAGTTGGAGG
GAAACGGAGATTGGTGATCCCAGCTTGAGCAAACTGTTCAAACAAGAGATCATACTCAGCCGTGTGAATGTAATCTTCATGATCGC
CAACGATGTGCAGCTCTCTGTTTTCCACATCGAAGTTGATCTCTAGAGTGTGAGAGTTCATCAAAATTTGCCACTCAAGATTCCCA
GAGTCATCATCTCTAGCTAAATTTTCTAGAGAGATGTTAGCTTCTGCGAAACCGCTTCGTATCTCCCTTTCACCACCACCACCACC
ATCAACTTCTTCCCAATCAAATTCATCAGCACGATCTTCTACTTGGAGTGAATGTATAGTCACACTAACATCATCATCGTCATATA
CATGGTCTTCATTCAAATCGATTCCCCATATCTCCCTCTCATCCTCAGGATCATCATCAGAACCCGATTCGACCGAAATTAACCGG
ATCTCACTGATATCGCGAAATCGAATCCCTGAATCGTCCTCGTCATCATCGAGTTCATCAAAATCACTATCATGATCTATATTCTC
AACAAAACAGCTTCCAGATTCCGATTCTAATTCCATAACAACCACACCACGCGATTCAGTAGCCTCGTTATCGTGAGGAGGAGTTA
CCTGAGGCTGCTCAACACGCTGGTGCGACGGATCCATAACGAAGGTTACGTCTGTAGAGAAACTATGGATAAATCGGAGATCAAGT
TCGTCGGCGTGAAACAACGGCGGAGAGAGAGAAAGAGTGATCGGTGAAGGAGAAGTTACGAGGAATCTATTTTTTTTTTTCTTCTT
GTCACGAACCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_850790 RING/U-box domain-containing protein [Arabidopsis thaliana] | 518 | 3e-050 |
| AAL25539 AT5g08140/T22D6_80 [Arabidopsis thaliana] | 518 | 3e-050 |
| CAB93715 putative protein [Arabidopsis thaliana] | 518 | 3e-050 |
| XP_002871309 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 513 | 1e-049 |
| XP_002514591 zinc finger protein, putative [Ricinus communis] | 409 | 1e-037 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SPL2 E3 ubiquitin-protein ligase CIP8 | 212 | 4e-016 |
| Q8RXD3 E3 ubiquitin-protein ligase AIP2 | 206 | 2e-015 |
| Q9VE61 E3 ubiquitin-protein ligase CG7694 | 190 | 1e-013 |
| Q9P0P0 E3 ubiquitin-protein ligase RNF181 | 190 | 1e-013 |
| Q3T0W3 E3 ubiquitin-protein ligase RNF181 | 187 | 3e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GYG0 Putative uncharacterized protein At5g08139 | 518 | 2e-050 |
| Q93Z52 AT5g08140/T22D6_80 | 518 | 2e-050 |
| Q9LEZ2 Putative uncharacterized protein T22D6_80 | 518 | 2e-050 |
| B9RLH2 Zinc finger protein, putative | 409 | 9e-038 |
| B9I2V1 Predicted protein (Fragment) | 347 | 1e-030 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G08139.1 zinc finger (C3HC4-type RING finger) family protein | 518 | 1e-052 |
| AT5G60820.1 zinc finger (C3HC4-type RING finger) family protein | 306 | 4e-028 |
| AT3G02340.1 zinc finger (C3HC4-type RING finger) family protein | 279 | 6e-025 |
| AT5G01980.1 zinc finger (C3HC4-type RING finger) family protein | 261 | 7e-023 |
| AT5G15820.1 zinc finger (C3HC4-type RING finger) family protein | 249 | 2e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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