RadishBase

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Information for unigene UN41028

FASTA Sequence

Unigene ID: UN41028	Length: 1227	SSR
ATACATTATAACTTGAAGTGTATTAGGCACCTGTCTGAGCGTATATCTAGACTATATATATATAGAGAGAGAGAGAGAAGATGGGG AGACAGCCATGTTGTGACAAAGTAGGGTTGAAGAAAGGGCCATGGACTGCTGAGGAAGACAAGAAGCTCATCAACTTCATCCTCAC CAATGGCCACTGCTGTTGGAGAACTCTTCCCAAACTTTCTGGACTGTTGAGGTGTGGCAAAAGCTGCAGATTAAGATGGATAAATT ATTTGAGACCTGATTTGAAAAGAGGTCTTTTATCAGAATGTGAAGAACAGATGGTCATTGATCTTCATGCCCAACTTGGCAATAGA TGGTCAAAGATTGCCTCTCATTTACCAGGAAGAACTGATAATGAAATAAAGAACCATTGGAACACACACATAAAGAAAAAACTAAG GAAGATGGGTATTGACCCTATGACCCATAAGCCTCTCCCTGAACAAGACGGTTCACAACAAGCTCAAGGGAGCAGGAGTTTAGAGC CTCATGATGACAAGAACACAAAACAAGAAGATAAACAAACTAAAGAAAAACAAGAACACCATCAATTAGGGATACATTTGGACAAG AGCAACACAACAATTTCTACTGATGATGGGTTTTGCATCGATGAAGTCCCGTTGCTAGATCCACATGAGATATTACTGGACATGTC TTTTGCTCATCATAATACTAGTGCTGAAAATGCTCACATTAACATTAGTAACTCCACTTCTCCTTCTTCCTCTTCCTCTTCTACCG CGTCGGGTATATCATCAGTACCGGGTGAGGAGTTCTCGAAGTTTCTTGAGGAAATGGAGATTATTGACCTCAAGTGGCTCTCATCC GATCATTCGTCAGGGGATAATATTATTTATAAAGACGCCAAGTTGGACAACAATGTTGATACGATGAACTTGTGGGACATCAATTA TTTGAGCAGCTTGGAATTGTTTATGAATGATCATGATGATGATTTTGTTGGAAGCCGGATGTTCAAGAATGGTTTAGATCAATATT CATGAACATTTTACTTTCAGTTTTCTTTTTCATGTTGTTTTTAATTATTTCTTCTTGTTTGTTTTCGAAGTGGGCGATTTGGATTT GGCCTTGGTGTTGCAATTTAGTGGACTATTAGGTGTAAGATACATATGTAATAAAGATTGCAATTGTGAACATACTTTTTTCAGTT GATTATTTTGACCTATTTGTTAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_197163 myb domain protein 43 [Arabidopsis thaliana]	1260	3e-136
XP_002871726 hypothetical protein ARALYDRAFT_909643 [Arabidopsis lyrata subsp. lyrata]	1211	1e-130
BAF80451 MYB-related transcription factor [Nicotiana tabacum]	765	7e-079
ACU20065 unknown [Glycine max]	753	2e-077
XP_002887017 hypothetical protein ARALYDRAFT_894261 [Arabidopsis lyrata subsp. lyrata]	736	2e-075

Swiss-Prot top hits (Blast detail)	Score	e value
Q50EX6 Protein ODORANT1	635	3e-065
P80073 Myb-related protein Pp2	564	6e-057
P81394 Myb-related protein 315	528	8e-053
Q9SZP1 Transcription repressor MYB4	512	6e-051
Q8LPH6 Transcription factor MYB86	510	1e-050

TrEMBL top hits (Blast detail)	Score	e value
Q9SPG7 MYB transcription factor	1260	2e-136
A8CCM9 MYB-related transcription factor	765	5e-079
C6TE13 Putative uncharacterized protein	753	1e-077
B9H3B1 Predicted protein	711	8e-073
B9GUS6 Predicted protein	710	1e-072

Arabidopsis top hits (Blast detail)	Score	e value
AT5G16600.1 MYB43 (myb domain protein 43); DNA binding / transcription factor	1260	1e-138
AT1G66230.1 MYB20 (myb domain protein 20); DNA binding / transcription factor	680	2e-071
AT4G22680.1 MYB85 (myb domain protein 85); DNA binding / transcription activator/ transcription factor	668	4e-070
AT4G12350.1 MYB42 (myb domain protein 42); transcription factor	634	4e-066
AT5G14340.1 AtMYB40 (myb domain protein 40); DNA binding / transcription factor	583	3e-060

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			40%


10	2			40%


20	1			20%

Unigene Members	Member information