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Information for unigene UN41041
| FASTA Sequence |
| Unigene ID: UN41041 | Length: 986 |
SSR | | CGAGAACAATTAAGTTGAAACTTGAAAAGAATAGCAATCATATTCTCTTTTTATTGAAACAACAAAGTGATCGAAGTTCTTAACTG
ATTTTGAGGTAGTTTTATATACAAACAAAGGAAAAAACAACAACAGAATACTACTTAAGCTCGCACAGCTTGAGACTCCTTCGCTT
CTCCTGCTTTCAAGAAAGCTCTCTTCTTTAGCTTGTTCCTGAAACCTCTTTTCCTGCTAAACGCAGTTTCCACTGGCTGACCCGTC
CTCACTGCTTCACGGATTGCTTCAACTAAGTCACGGTTAGCCTCAGTGTATAGACTTGTCACCGTTCCGTATTGCCCAGCTCTAGC
TGTTCGACCTATCCTGTGAAGAAAATCCACCGCAGAACTAGAAAAATCCGCCTGAATAACGTGTGAGACGTTAGGAACATCAACTC
CACGTGCAGCTGCGTCAGTACAGACAAAGACACCACCGTTTTCTCTGAAGTCCGCTAATATATTAGCACGCTCTTCAAGTGTATGG
TTCTTATGATAACGATAGCACTGGATACTAGCTTTCTCCAGTACATCGGCTACTGCTTCAACCGCCTCAACTGTATTTGCAAACAC
CATCGTCCTGTCTATGCTACTGTTGTTGTTGTTGTTTACAGCCTCTATGAGAGCATCGACTTGTGTGTCTACTGTGACTTCAACCC
ATTTCTGCTTGAGTCTAGGACTGTTTCGGTGAAGAAAGCTTCCGCTAACCCAGACAGCATCTTGGAACATATGTTTCAAAAGTCCT
CCAGCAGTTTTCTTCCCGTTGACTGGAAGCGTGGCCGCAATAAATATATACTGCTTGCTACGGGTATAGATCTTTCTCACTCTTCT
CCACCGCTTTCTAATATCAGGACCAGCTCCATTTTCAGCGGTAGGGATTTGTGTGGTTTCATCAAGATACTCGAGTTCCTCTTCCT
CTTCCTCCTCTTCATCAGAGATAGACCCGTCTTCAAAATC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAA09210 RNA helicase [Arabidopsis thaliana] | 1252 | 2e-135 |
| NP_176207 DEAD-box ATP-dependent RNA helicase 22 [Arabidopsis thaliana] | 1252 | 2e-135 |
| XP_002886643 hypothetical protein ARALYDRAFT_475311 [Arabidopsis lyrata subsp. lyrata] | 1244 | 1e-134 |
| XP_002312702 predicted protein [Populus trichocarpa] | 907 | 2e-095 |
| XP_002266408 PREDICTED: hypothetical protein [Vitis vinifera] | 892 | 9e-094 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q944S1 DEAD-box ATP-dependent RNA helicase 22 | 1252 | 7e-137 |
| Q6H601 DEAD-box ATP-dependent RNA helicase 22 | 830 | 6e-088 |
| Q5A4E2 ATP-dependent RNA helicase DED1 | 242 | 9e-020 |
| A5DQS0 ATP-dependent RNA helicase DED1 | 241 | 1e-019 |
| A6ZP47 ATP-dependent RNA helicase DED1 | 234 | 8e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HLW7 Predicted protein | 907 | 1e-095 |
| B9S2K2 Dead box ATP-dependent RNA helicase, putative | 850 | 4e-089 |
| C5XC08 Putative uncharacterized protein Sb02g023840 | 841 | 5e-088 |
| B8BF20 Putative uncharacterized protein | 837 | 1e-087 |
| B9G3C6 Putative uncharacterized protein | 830 | 9e-087 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G59990.1 DEAD/DEAH box helicase, putative (RH22) | 1252 | 6e-138 |
| AT4G09730.1 DEAD/DEAH box helicase, putative | 229 | 3e-019 |
| AT1G31970.1 STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | 189 | 1e-014 |
| AT3G58510.1 DEAD box RNA helicase, putative (RH11) | 189 | 1e-014 |
| AT3G58510.2 DEAD box RNA helicase, putative (RH11) | 189 | 1e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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