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Information for unigene UN41046

FASTA Sequence
Unigene ID: UN41046Length: 894 SSR 
TTTTTAGTTAACAAAAGAAACTTTATGATTAAATTGCATACGGTTAGTTCAATAATATTATACAATGCACAGTAATCGCCTTATGT
TGTCATCACATTTCAAGAGTTGACCGGATCAATAAAAAAAGTCATTGGAATCAGTTAGGATCTAACTTTTGCAAGCCGAGCTCGAA
TCTCCTCCAGTTCTTCCTCATCATCATCATCACCTTCTGCAATTGCTTCTTCCTCGCGGGAAGTGCTCGCCTTGTGCGCGGGTACC
TTTATCCTTTCCTTCCTGACAGCTTCTGGGAGCTCAGCAGCGGTTTCTCCAGCAATAGCTGTCAATACTTGATCAACCTCATCGTC
GATCTCATCTTCCATATCCTCAGAATCCAGTGCATTGTCAATGGCATCATTCACAAACTCCTCAATCACTCCAGCCTTAGTCATCT
CTTTGCTGAACTCCTGCATAGTTGCAGCCATTTGGGGGGCTTTCATGAGGTTATTGACTAGCTTCATAACCTCTGCGCTCTTGGAC
AGATGCCCAACTGTTCGAGCAACAGCAACACTTTCACCGAGGTGCATTGAAATGGAATTCATCTGCGCTTTGTTTTCGTATAGACG
GTTCACTGTTCTTCTCGAACTCACAATCTCCTTAGCAAGCGCCTTGGCTGAGACCATATCATTTCGCTTTGCAGCTTCTTTAATAG
CTTTCTGTACATTTCTCTCCTCTTTCTGTATATCTCGGATTTGGCGTTCGATGTTACGGCACTCCTGACGAAGCTTACGTTGCCAG
TCACGCAAGATTTGCTTCGGATCAGGCTTTGGCTTTATTATCTTCATCACGCTCTCCATTCCTTCGCTGTGTTCTGTTTCGCTCTC
TTCTTACAAACAATATTTTGTATTATGGGACCTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872026 SNF7 family protein [Arabidopsis lyrata subsp. lyrata]10657e-114
NP_197686 vacuolar protein sorting-associated protein 24-1 [Arabidopsis thaliana]10532e-112
AAN60307 unknown [Arabidopsis thaliana]10405e-111
ACU21093 unknown [Glycine max]9402e-099
XP_002311070 predicted protein [Populus trichocarpa]9383e-099

Swiss-Prot top hits (Blast detail)Scoree value
Q9FFB3 Vacuolar protein sorting-associated protein 24 homolog 110537e-114
Q9LXH5 Putative vacuolar protein sorting-associated protein 24 homolog 27141e-074
Q8CGS4 Charged multivesicular body protein 34327e-042
Q9CQ10 Charged multivesicular body protein 34301e-041
Q5RAU5 Charged multivesicular body protein 34264e-041

TrEMBL top hits (Blast detail)Scoree value
C6TGZ1 Putative uncharacterized protein9401e-099
B9HLG6 Predicted protein9382e-099
C6TD23 Putative uncharacterized protein9266e-098
Q8GVS9 Putative endosomal Vps protein complex subunit8674e-091
B4FP46 Charged multivesicular body protein 38541e-089

Arabidopsis top hits (Blast detail)Scoree value
AT5G22950.1 VPS24.110582e-115
AT3G45000.1 VPS24.27193e-076
AT3G45000.2 VPS24.25043e-051
AT2G06530.1 VPS2.12642e-023
AT1G17730.1 VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)1371e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  50%
 
102  50%

Unigene MembersMember information