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Information for unigene UN41159
| FASTA Sequence |
| Unigene ID: UN41159 | Length: 1993 |
SSR | | CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGCTGCGTGTGTGTGTGTGTGTTCGGCCGTTTTGGGGAATAGATTAGATAA
TGGGTGTGGGAGGAAAGTTCTGGGATTTGGTGAGACCATATGGTCGAAACGAAGGTAGTGATTATCTGAGAGAGAAACGGGTGGCC
GTTGATCTTTCCTTCTGGATCATTCAGCATGAAACTGCCGTCAAGGGTTTTGCCCTTAAACCTCACCTCAGGCTCACCTTCTTCCG
TACTATCAATCTCTTCTCCAAGTTTGGAGCGTACCCAGTATTCGTGGTTGATGGAACACCTTCGCCCTTGAAATCCCATACCAGAA
TCTCTAGGTTTTACCGATCTTCTGGAATTGATACCTCGAGTCTCCAAGAGGGCGTAGTCTCCGTTGAGAGAAATAAGCAGTTTTGT
GAATGGGTTACCGAATGTGTGGAGCTACTTAAATTGCTCGGTATCCCTGTCCTGAAAGCAAATGGTGAAGCTGAAGCTCTCTGTGC
TCAGCTCAATAGCCATGGTTTTGTTGATGCCTGCATTACTCCTGATAGTGATGCTTTCCTCTTTGGTGCTTCCTCCGTTATCAAAT
CCATCAAGCCTAACTCCACTGAGCCGTTCGAGTGCTACCATATGTCAGATATCGAAGCTGGTCTCGGTCTGAAGCGGAGACACTTG
ATAGCCATCTCTCTTTTGGTTGGTAACGACTTTGATTCAGGTGGTGTTTCTGGGATTGGTCTCGATAAGGCACTTCGCATTGTCCG
TGCCTTCTCTGAAGACGACATTCTCCAAAGACTAGAGGACATTGGAAAAGGGTTTAAACCTGCAGTGAGTGGTGGAACCAAATCAG
TGGATGTTGATGATGATGATGATGGTGTAGAATCAAGCTCCCAGATGAAAAGAAGATTGCCTCACTGTTCTCGCTGTGGACACCCA
GGCAGCAAGAGAAGTCATTTCAAGTCCTCTTGTGAGCACTGCAGCTCTGATTCCGGTTGCATTAAGAAACCGTTGGAGTTTACATG
TGAATGCTCCTTCTGCACCAAGGATCGGGAATTAAAGGAACAGAAGAAAACCGAGAATTGGTGGATCAAAGTCTGCGATAGGATTG
CTCTAGGCCCAGATTTTCCCAACAGAAAGATTATCCAACTCTATCTATCCGACAGTTTCACAGAAGATGGGTCTTCAATGTCTTGG
GGAACTCCAGATACGGAAATGCTAGTGGATTGCTTGGTTTTCAACCTGCACTGGGATCCTTGTTATGTTAGGAAAATGTTGCTTCC
GATGTTGTCGACCATTTATCTAAGAGAAAAGGCAAGAAGCAGCAACACGGGGAATCCCTTGTTATGCGACCAGTACGAGTTCCATT
CAATCAAGTGCATGAAAACTAGATATGGGCATAAGTCATTTGTGATCAGGTGGAGAAAACCCAGATCTACAAGTGGTTTAACTCCA
GAGAAACCGATTGTTGTATGGGAAGATGAAGAAGAAGTGGTGGAAGAGGAGGAGTGTGTTGGTCTCTTAGATGGGTTAAATGAACC
ACAAGTGCAAGATGATAACGGTGAATGCTTCTTGCTAACTGATGAATGCGTAGGACTTGTCCAGTCTGCTTTCCCGGAGGAGACAG
AGCACTTCCTAAAAGAAAAGAAACTGCGAGAGTCGAAAAAGAAGAATGTTTGTGAAGGAGCAGCATCATCATCAGTGGGGGCACAA
AGAAGTATAACTGATTTCTACCGATCAACGAAAGCAGCAGCAACACCAGCTCAAAGTGTAGACACAGGGGGGAGCTCAATAGCTTT
TGCTTCTGTTGAAAAGAAGAGACAAGCAACTAGTGGTAGCTTTTCAAAGTCTGTAAGGCGTCGTCTTTTGTTTGGATAGAATAGTA
ACATATTCTTGTTTTTCTTAGTAAACCCAGTTTCAGGTCTGTGTAAAAAGGAGTTGTTTAACTTTGAATATTTTCTCTAATCTAGT
AGATCATCTTGTTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| Q9LPD2 RecName: Full=Flap endonuclease GEN-like 1 | 2375 | 3e-265 |
| NP_171691 5'-3' exonuclease-like protein [Arabidopsis thaliana] | 2375 | 3e-265 |
| NP_001184887 5'-3' exonuclease-like protein [Arabidopsis thaliana] | 2359 | 2e-263 |
| XP_002511787 DNA binding protein, putative [Ricinus communis] | 1689 | 9e-186 |
| AAF76467 Contains similarity to excision repair protein ERCC5 from Homo sapiens gi|1082359 and contains XPG N-terminal PF|00752 and XPG I-region PF|00867 domains [Arabidopsis thaliana] | 1628 | 1e-178 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LPD2 Flap endonuclease GEN-like 1 | 2375 | 1e-266 |
| Q64MA3 Flap endonuclease GEN-like 1 | 1285 | 3e-140 |
| Q8BMI4 Flap endonuclease GEN homolog 1 | 382 | 1e-035 |
| Q17RS7 Flap endonuclease GEN homolog 1 | 378 | 4e-035 |
| Q29FC1 Flap endonuclease GEN | 335 | 4e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RDJ8 DNA binding protein, putative | 1689 | 6e-186 |
| A2Q3P8 Helix-hairpin-helix motif, class 2 | 1537 | 3e-168 |
| A6MCZ6 DNA repair protein | 1325 | 1e-143 |
| B7E8Q8 Putative uncharacterized protein | 1292 | 7e-140 |
| A2Z386 Putative uncharacterized protein | 1290 | 1e-139 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G01880.1 DNA repair protein, putative | 1833 | 6e-205 |
| AT3G48900.2 DNA binding / catalytic/ chromatin binding / nuclease | 301 | 3e-027 |
| AT3G28030.1 UVH3 (ULTRAVIOLET HYPERSENSITIVE 3); DNA binding / catalytic/ endonuclease/ nuclease/ single-stranded DNA binding | 269 | 1e-023 |
| AT3G48900.1 DNA binding / catalytic/ chromatin binding / nuclease | 235 | 1e-019 |
| AT5G26680.1 endonuclease, putative | 143 | 6e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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