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Information for unigene UN41173
| FASTA Sequence |
| Unigene ID: UN41173 | Length: 873 |
SSR | | TATTCTCCCTCTAACCAATGGATAACAGCTGTATAGATGACAGTACCAGCAACAACACTTCAGGCTCTCTCTCCATCTCTACTCCC
TCGGCGAAAAAGAAACTCTCTCCTCCTCCTCCTCAGGCGACGATGCGTCTCTACAGAATGGGAAGCGGCGGAAGCAGCGTCGTGCT
TGATTCGGAGAACGGCGTCGAGACAGAGTCGCGGAAGCTCCCGTCGTCGAAGTTCAAAGGCGTCGTCCCTCAGCCCAACGGGAGAT
GGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGCACTTTCAACGAGGAGGAAGAGGCCGCCGCTTCCTACGACATC
GCCGCTCGGAGATTCCGGGGACGCGACGCCGTCACGAACTTCAAGTCCCCGCCGGCAACGACGGCGCTCGACGGAGCCGCAGACGC
TGAGTCTGCTTTCCTCGAGGCTCACTCCAAGGCCGAGATCGTTGACATGCTGAGGAAACACACTTACGCAGACGAGCTTCAGCAGA
GCAAACGGAAGTTTCTCGATGGTAACGGTAACGGAAAGTCAGGGACGGCGATGAGTAACTCTCGCGGAAACGACGGCGTTTCGAGA
GCGCGTGAGGTACTTTTCGAGAAAGCCGTTACGCCTAGCGACGTCGGGAAGCTTAACCGGTTGGTGATACCGAAACAGCACGCGGA
GAAGCATTTTCCGTTACCGGCGATGACGACGGCGACGGCGGTGACGGCGATGTCTCCTTCTCCGACGAAAGGCGTTTTGATTAATT
TGGAAGACAGGACGGGGAAGGTGTGGCGGTTCCGTTACTCGTACTGGAACAGCAGTCAAAGTTACGTGTTGACTCAGGGATGGAGC
CGGTTCGTTAAGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_173927 AP2/ERF and B3 domain-containing transcription factor TEM1 [Arabidopsis thaliana] | 1107 | 8e-119 |
| XP_002315958 AP2 domain-containing transcription factor [Populus trichocarpa] | 920 | 4e-097 |
| XP_002311438 AP2 domain-containing transcription factor [Populus trichocarpa] | 902 | 5e-095 |
| XP_002524409 DNA-binding protein RAV1, putative [Ricinus communis] | 897 | 2e-094 |
| BAJ34161 unnamed protein product [Thellungiella halophila] | 866 | 7e-091 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C6M5 AP2/ERF and B3 domain-containing transcription repressor TEM1 | 1107 | 4e-120 |
| P82280 AP2/ERF and B3 domain-containing transcription repressor RAV2 | 959 | 5e-103 |
| Q8RZX9 AP2/ERF and B3 domain-containing protein Os01g0693400 | 749 | 1e-078 |
| Q6L4H4 AP2/ERF and B3 domain-containing protein Os05g0549800 | 743 | 6e-078 |
| Q9ZWM9 AP2/ERF and B3 domain-containing transcription factor RAV1 | 678 | 2e-070 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HWL7 AP2 domain-containing transcription factor | 920 | 3e-097 |
| B9HIZ2 AP2 domain-containing transcription factor | 902 | 3e-095 |
| B9SEJ0 DNA-binding protein RAV1, putative | 897 | 1e-094 |
| B5AR72 RAV | 841 | 4e-088 |
| D5L120 AP2 domain class transcription factor | 833 | 3e-087 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G25560.1 TEM1 (TEMPRANILLO 1); transcription factor | 1107 | 3e-121 |
| AT1G68840.1 RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor/ transcription repressor | 959 | 5e-104 |
| AT1G13260.1 RAV1; DNA binding / transcription factor/ transcription repressor | 848 | 4e-091 |
| AT3G25730.1 AP2 domain-containing transcription factor, putative | 441 | 6e-044 |
| AT1G50680.1 AP2 domain-containing transcription factor, putative | 375 | 3e-036 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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