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Information for unigene UN41233
| FASTA Sequence |
| Unigene ID: UN41233 | Length: 1367 |
SSR | | AACAACAAACCCATCTTCATCATAGCATCTTTCTTGGGACACACGTTTCAACACCAAACTTGATGGAGATTAGGAATTTACAAATT
TCCAAAAAACATCTTAACCCTAACTTACACAAACAATTTTAGTTTCACTCTGAAGAGGTTTTAACTTATCCATACCAGCAAGAAAA
GAGAAACTAACGCAATGCGCACATAGATAGAAAACGACACCCGACACTATAGTACCTTACATACTCAGTTGACTCGAAAGGCCGTC
ACTTTGAGAACGAAATCTCTAGTTCTTAGCAGCTCAAACACGCAGACATCACCTTCTCCTAAGTTATTCTCCACAGTAAACTCATA
CCAACCTTGACTGAACTTAGCTCTCCCTGCTTTGTATAGGCATCTCACAGGCCATTGTTTCTCCCCGAGCTGGACCTTGATGAACC
CCGAGATCCCACTCAAGTACTTCTCAGCAAAACCAGAGGGCAAATACATGATACAACCTCTGTATAGATAAGATGGTCGTAGAACA
ACTCTGAAGAAAGGGTTTGTTGGCTCAAACGTTTTGGATGTGTTGATGGCCCTCTCTCTCTCTTCAGTAGTCGCTGTTCTCTTCCT
TGCAGAAGCACTCTCGTAGAACTTCGAACGGCTCTCAGGGTCATCAACTCTTGGAGCAGATGAGTTTACTTCCTCTGGATTGACAG
GATCAGCGTTCTTCTTCCTCCCTCTCTTTTTAGTAACTTTTAGAGTTGGCGTTGGAGTTGCCTCTTCGGCTTTAACAGGTCCAGCG
AAGAAGCTCTGGATGGCTGAACTAGCATGCTGTTTATTGGCATGTACAGTGGTCTCAGCATCTTCATCTTCAAGGTCTTCAAACAA
ACATGGGCGTTTGAAGTGGTTGTGTGCTGCGGAGTCCATGAGACCGGTGGAATGGTAGTTGATCTCGGAGTGTGATAAGTTGTAAA
TGCTGACGCTGAAGGCGGAGTTGCCTTCGTATCTGAAGATCAAAAGGTAACCAATGCGGATAGAGTAACGGTCAACAAACTCTTAC
CAACCATCTTGAAACCAGATCTTGTTGTTGTCAGCTTTCCTTAGTCCTACACGCCAAACATGACCATCAGGTACTGTGAGTGCAAC
TGCAACCGATAGCTCGTCCTTGAATTTACTCGCAAACTTATCTGGAACTCTCAGACGTTTTTCTTGGATAGTGGAAGGGAAAATCA
ACTTGTGGAAGAAAGGGCGTGGCATGTTGTTCAGAGTAAACAGTGAGAAGAGACAAAAGTCAGATCATGAAACGACGCAGGAGAAC
ACGCGACAGAGACAGAGGGAAGCCCTTTCAGATCTGTGAAGAGTTTTGTATAAAAGCTTTGATTATGGTCAAAGAGG
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| GenBank top hits (Blast detail) | Score | e value |
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| AAR92199 reduced vernalization response 1 [Brassica rapa] | 1488 | 1e-162 |
| AAQ55453 reduced vernalization response 1 [Brassica rapa subsp. campestris] | 1484 | 3e-162 |
| BAB01695 unnamed protein product [Arabidopsis thaliana] | 922 | 5e-097 |
| XP_002519145 DNA binding protein, putative [Ricinus communis] | 915 | 3e-096 |
| NP_188529 B3 domain-containing transcription factor VRN1 [Arabidopsis thaliana] | 874 | 2e-091 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8L3W1 B3 domain-containing transcription factor VRN1 | 874 | 7e-093 |
| Q9XIB5 B3 domain-containing protein REM19 | 807 | 4e-085 |
| Q2QMT2 B3 domain-containing protein Os12g0592300 | 237 | 5e-019 |
| Q10GM4 B3 domain-containing protein Os03g0622100 | 152 | 4e-009 |
| Q10GM3 B3 domain-containing protein Os03g0622200 | 152 | 4e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6R2U8 Reduced vernalization response 1 | 1488 | 8e-163 |
| Q6V0J6 Reduced vernalization response 1 | 1484 | 2e-162 |
| B9RZH6 DNA binding protein, putative | 969 | 1e-102 |
| B9N4T6 Predicted protein (Fragment) | 599 | 9e-060 |
| B9NJ20 Predicted protein (Fragment) | 571 | 2e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G18990.1 VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor | 874 | 7e-094 |
| AT1G49480.1 RTV1 (related to vernalization1 1); DNA binding / transcription factor | 807 | 4e-086 |
| AT5G18000.1 transcriptional factor B3 family protein | 114 | 9e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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