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Information for unigene UN41235

FASTA Sequence
Unigene ID: UN41235Length: 1252 SSR 
TCTGACCTCAGCTTTATCTTTTCTTTTATTACAACGAGATCAATTATTTTCTTGACTAGTATAGGTTTTGATTGAGCTTTTGTCTA
ATAACTTATCTTTCTTCTTTTCCGAAATCTTTGACAAAATGTAGGGTTTTTTCTAATCTATGATGTAATGATTTCATATTATTGAG
TTCTTTTGGCAGAACTCATGATGTTTCCTTAGTTTGGAGTGTATAAAAAGCTAATCTTTCTCTGTTTTTTTTTTGTATGGTTTAAG
TTTTTCTTTACAGATCATCAGATTTGGTTTCATATTCAGACGCTGAGATTTCAGATTCCGGAAAGATCTGGCTACACAAAAATGGA
CTACCCTGAAAGTTATCGGATAACGTTTACTGGAATCTTGGTTGCTTTTCTTGAATTAGCATTTGCTTATTGTCTATTATGTGTAT
CAGCTTTGGTCTTTATTGCATCCAAGTTCTTACTCTATTTGCCTTGTCCCTCTTCTGGAATGCTTGGGTACCAAAACGTCCATAAA
CTTCTCTTTGACTTGCCATTCGAGATCATACTCAGAATCCAGAAGATGGCCGTTACAAGTAGAACAAGCGTTTGGCATCATCAAGA
CCACGAAGAGAGAAAGAGTTCGGTTGGTAAAGATAAGAACTTGGAATTAATGAATAAGGTGAGATTGCTTGAAGAAGCTGTTGAGG
AAGAGAGGTTGGCTCGATCTGCTCTAATCGTGGAATTGGAGGAAGAAAGAGCGGCTTCAGCGTCAGCAGCTGATGAAGCCATGGCT
ATGATTCTGAGGTTACAAGCTGATAAAGCTTCACTTGAAATGGAAGGGAAGCAGTATGAGAGAATGATTGAGGAGAAATTTGCATA
TGATGAGGAAGAGATGAATATTCTCAAGGAGATTTTATTCAAAAGGGAGAGGGAAAAGCATTTTCTCGAGAAGGAACTTGAGACTT
ACAAGCACATTGATGATGATGATGATCAAGAACGGATTGTGTATGATGTTCATGTCATTGAGAATGATAATAATGCTAAGAAGAAA
GATGTTGACGCAGCAGCACATAAAGTAAGGGACTGTGATGATCAGGTGAAGCAAATGGATGACTTATTGAAGGACAGTGATTCATC
AACATAACCTTCTTAATAAAGGTTTTCTGTTGGTTGTAATATCTTTGCTCTCTTGCTACTCTGTTTTCCGTAATGTGGTTTGGGTA
GACTTTGTATAAATTTGTGAAAATATTAATGTAGAACTTTGTGACATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002863266 hypothetical protein ARALYDRAFT_497080 [Arabidopsis lyrata subsp. lyrata]8931e-093
NP_193052 uncharacterized protein [Arabidopsis thaliana]8921e-093
XP_002521088 conserved hypothetical protein [Ricinus communis]3713e-033
XP_002518099 hypothetical protein RCOM_1019660 [Ricinus communis]3633e-032
XP_002323777 predicted protein [Populus trichocarpa]3624e-032

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SVR1 At4g131608929e-094
B9S519 Putative uncharacterized protein3712e-033
B9RWI0 Putative uncharacterized protein3632e-032
B9IJH5 Predicted protein3623e-032
B9RWI2 Putative uncharacterized protein3471e-030

Arabidopsis top hits (Blast detail)Scoree value
AT4G13160.1 unknown protein8925e-096
AT4G13630.1 unknown protein3342e-031
AT1G04890.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13630.1); Has 6609 Blast hits to 4661 proteins in 382 species: Archae - 48; Bacteria - 283; Metazoa - 4004; Fungi - 343; Plants - 346; Viruses - 6; Other Eukaryotes - 1579 (source: NCBI BLink).3281e-030
AT1G70750.1 unknown protein2473e-021
AT5G16720.1 unknown protein2421e-020

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
211  50%
 
101  50%

Unigene MembersMember information