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Information for unigene UN41366
| FASTA Sequence |
| Unigene ID: UN41366 | Length: 897 |
SSR | | GGAAATGTCTGGCGTTGGCGAGAACCAGCTTTTCTCCATTGTACCTGATGAACTCAAATTCCTTTTTGAACTCGAGAAACAAAGCT
ACTGTGATCTTAAAGTTGCCAATAAAACTGACAACTATGCTGCTTTCAAGGTAAAGACAACATCTCCAAAAAAGTATTTTGTTAGA
CCCAACACTGGTGTCATTCAGCCATGGGACTCCTGCATCATTCGAGTTACTCTACAAGCGCAAAGGGAGTATCCTCCAGACATGCA
GTGCAAAGACAAGTTTCTCCTTCAAAGCACCCTTGTTCCTCCACACACCGATGTTGATGATCTTCCACAAGATACATTTACAAAGG
ACAGTGGGAAAACGTTAACGGAGTGTAAGCTCAAGGTCTCTTATATCTCCTCCTCTACTACAACCCAAAGATCCTCTGATTCTGGA
GCTACCAATGTCGATGCAAATTCCTCTGAAACCATCTCTACTGTTCAGCGGTTGAAGGAAGAGCGAGATGCAGCTGTAAAGCAAAC
ACAACAGCTGCAACATGAATTGGAGATGGTGAAGAAACGAAGAAATAACAGCGGAAATGGGTTATCCTTAAAGTTGGCAGCTTTGG
TTGGACTCATTGGACTTATCATCGGTTTCATCCTAAAACTCACCTTAGCTTCTTCTCCCACATAGAAAGCTATCCAAAACGGTTTT
GGGGTATTCTACTCTGTTAACCCTCTCTCTCTCTCTATGATCTGTTCTACTTTTGTTTTTGTCCATTAAAAGGTTTGCTTCTTCGT
CAGTTGTATTGGATGTACATTTTTTGACTCAACAGACTCTTTCGTGATTTGCTTTGTACTCTTTCATTGCTTCATTTAGTGTTGAA
ATGCCTAATCCTTTATTGTGAAGGAAAATCTGTTTCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_199529 VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] | 999 | 3e-106 |
| XP_002863353 vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] | 997 | 5e-106 |
| ABD65040 vesicle-associated membrane protein, putative [Brassica oleracea] | 913 | 3e-096 |
| AAO32056 putative VAMP-associated protein [Brassica rapa subsp. pekinensis] | 729 | 6e-075 |
| XP_002531789 vesicle-associated membrane protein, putative [Ricinus communis] | 728 | 8e-075 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q10484 Uncharacterized protein C17C9.12 | 172 | 1e-011 |
| Q16943 Vesicle-associated membrane protein/synaptobrevin-binding protein | 171 | 1e-011 |
| Q9P0L0 Vesicle-associated membrane protein-associated protein A | 170 | 2e-011 |
| Q5R601 Vesicle-associated membrane protein-associated protein A | 170 | 2e-011 |
| Q9Z269 Vesicle-associated membrane protein-associated protein B | 170 | 2e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LVU1 Putative VAMP (Vesicle-associated membrane protein)-associated protein | 999 | 2e-106 |
| Q2A9M0 Vesicle-associated membrane protein, putative | 913 | 2e-096 |
| Q84XQ0 Putative VAMP-associated protein (Fragment) | 729 | 4e-075 |
| B9T0M0 Vesicle-associated membrane protein, putative | 728 | 5e-075 |
| B9GYP5 Predicted protein | 705 | 2e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47180.1 vesicle-associated membrane family protein / VAMP family protein | 1000 | 9e-109 |
| AT5G47180.2 vesicle-associated membrane family protein / VAMP family protein | 1000 | 9e-109 |
| AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 350 | 2e-033 |
| AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 350 | 2e-033 |
| AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 350 | 2e-033 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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