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Information for unigene UN41405

FASTA Sequence
Unigene ID: UN41405Length: 1391 SSR 
GGGGTAATATTATAAACCATAAGTTTATTCCCGTCTCTTCTTCTCACCACTCGTTAATCTTGTTCCTCTGTCGTCTTCCTCTCACC
GCCTCTCTCCCTTGATTTTTTTTTCTTTTATATTTATCCAAACAATCATTTTTAAGATACCTTTTTTTTTGTGTGGAAAGACTATG
GCCTTGTTCGTGAGCTTGATCTTAGGGATAATCGCTGGATGGTTAGCTTTCGTTGTTGGGTTGCTCATAGGATGGGCATGGAGACC
CAGAGGGGCTTCTTGTTCTGACAAGGAAAGAGTGAAACTTCAGTGTTGTGCTCCTCGATCTTTTGATTTGTCTTTACCATCGTCTC
CCTCTCCTCGTTCCGCAACTCCTCCGTTAAAGGGGTTTGGTTCTGCTCCTTGCTTGAAAGCTCTTGCCTGCGACACGTGGACTATG
GCTTTGAGACAGCAGAAAACAGTCTCCCCTGTTTCTTCTTCTTCTTCTTCTTCATGTGATGATGTGATTGCTGGAGGGAAGAAAAC
AGAGGAGAGGTTGCCTAATACTGTGACAGAGTTAGATTTGAGACATCTTGTGCAGTTGGTTGAGAGGAAAGATGGTGGTCATGCTT
GGATTCAGATGATGGACCGGTTTACTCCTGGTATGAGATACCAAGCTTGGCTAAGAGAGCCTAAGAATGGTCCTACTTAGTATAGA
AGCAGGACTGTGTTTGAAGATGCAACTCCTGAGATTGTAAGAGATTTTTTCTGGGATGATGAGTTTAGACCAAATTGGGATACAAT
GCTCTCTAGTTCAACTACTGTTGAAGAGTGCACAAGTACTGGAACCATGATTGTTAGATGGATACGCAAGTTCCCCTTTCTTCTGC
AGTGATAGAGAGTATGTGATTGGTCGCAGGATATGGAACTGTGGCAAATCTTATTACTGTGTTACGAAGGGAGTGTCGGTTCCTTG
TGTTCCACGCAACAACAAACAGAAACGTGTGGACTTGTTCTACTCGAGCTGGTGCATTCGACCAGTGGAATCAAGAAGAGAGGATG
GAGTGGCAAGTGCCTGCGAAGTGCTTCTGTTTCACCACGAAGACATGGGGATACCAAGAGAGATCGCAAAGCTCGGTGTGAAACGA
GGGATGTGGGGAGCGGTTAAGAAGATGGAACCTGGTTCACGTGCTTACCAAGAGCAAAGACTCTTAAGAGGTTTGCTAACGGTGGA
AGAAAACGTGAGCGCCAAGGAACTTCAACAACAACAAGTCAGAGTCGAACTACTACTAATACATAGATTGAAGTTCAAATGATTCA
GGATTAGTTTTTAGAACTGTAATAAGCTGTTTCTGCCAAATCTTATACATATGGAACAGTTTTTTTATAAAAGTAATCAATAAAAA
GAAAGTAATTTGTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568805 Lipid-binding START domain-containing protein [Arabidopsis thaliana]9611e-101
AAM65221 membrane related protein-like [Arabidopsis thaliana]9574e-101
XP_002866025 hypothetical protein ARALYDRAFT_918536 [Arabidopsis lyrata subsp. lyrata]8608e-090
BAB11579 membrane related protein-like [Arabidopsis thaliana]5685e-056
NP_001148371 CP5 [Zea mays]4763e-045

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8LAQ0 Membrane related protein-like9573e-101
Q9FK24 Membrane related protein-like5684e-056
B6T237 CP54762e-045
B6TV06 CP54762e-045
C0P4X2 Putative uncharacterized protein4743e-045

Arabidopsis top hits (Blast detail)Scoree value
AT5G54170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: CP5 (TAIR:AT1G64720.1); Has 233 Blast hits to 233 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).9615e-104
AT1G64720.1 CP54696e-047
AT4G14500.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1); Has 257 Blast hits to 256 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).4339e-043
AT4G14500.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1).4177e-041
AT3G23080.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14500.1); Has 247 Blast hits to 246 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).3882e-037

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  100%

Unigene MembersMember information