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Information for unigene UN41412

FASTA Sequence
Unigene ID: UN41412Length: 911 SSR 
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGCGGTTGTGTTCGAGAGAGAGAGGGTAAGCTGTGCTCGCCGCCCTAGCAAACCTCGGC
CTCCTTTTCTCCGCCGCACTAGCCAAAAGGTGATTTCCACCGCCGCCAGAATCGAACAAAAAGGGATCTCCAATGTCATCGTCGTC
AAGCGATTCGTCGAAAACAGGGATGGAGAGGAAGAAGAAAGGAGCTCCGATCAAATTCTTGGTGCCTCTGATTTACGCGCTTGCGC
TTCCTCAGGTTCGCTTGTCCTTGAGACATCATCCTGTTCTCAAGGATCGTCTCTTCGGTCTTGTCCTCGCTGGTGCTTTCGCTCAT
GGCTTCTATCTCGTGAATCCTCTTTTTATTATTGCCTCTCCATTAACTAATCTTTGTTGCTTTCTTGTCTGATTGTGAATCATATT
GGGTTGATAAGGTGTTATTACAATTTTTAGCATAGCTGATTTTTCTTTCATCACCTCTTGTCTGAAGATTTGGTTGTCTCCTAGCT
TCTTAAACTTGTATAGCTGCGTGTTGTCTTGTTGAGTTTCATCACCTCTTGTCTGAAGATTTGGTAGAAAAAAATGTACCTTCACC
AGTCTTGTGGACAGCTTCAAGCTTTTGAAGGAAGGCAAAGACGACTTGACGGAAGAAGAGATTTACCTCTCTTGTGATCTCGGTTG
GTGTCACTCGCATTGGCCACCCTTGAAAATGTTGAGTCAAAAGATGATGTAACAGTGAGAATGATGCAGAAGGCGATGATGAAAGA
AACACACGAATGTTGCAGTCTCTCACTGGAATGCCAAGTGCAGCCTTTGAAGTTTTAGTTAGAGACCAAGGTTCTGATTTGAAAGA
ATCAATCTGCCTCGTACGTTGTGTTCTCGCCCTTCCTCTTCAATCCTTCGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002887198 hypothetical protein ARALYDRAFT_315886 [Arabidopsis lyrata subsp. lyrata]2861e-023
NP_564939 uncharacterized protein [Arabidopsis thaliana]2762e-022
ACU19699 unknown [Glycine max]2181e-015
XP_002524438 conserved hypothetical protein [Ricinus communis]2091e-014
XP_002316603 predicted protein [Populus trichocarpa]2072e-014

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8L9R6 At1g686802761e-022
C6TCZ7 Putative uncharacterized protein2188e-016
B9SEL9 Putative uncharacterized protein2098e-015
A9PBA0 Predicted protein2071e-014
C5Z157 Putative uncharacterized protein Sb09g0053201793e-011

Arabidopsis top hits (Blast detail)Scoree value
AT1G68680.1 unknown protein2768e-025
AT5G36980.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02400.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1253e-007
AT5G47770.1 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase1182e-006
AT4G02400.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.1); Has 7412 Blast hits to 4272 proteins in 301 species: Archae - 10; Bacteria - 517; Metazoa - 2926; Fungi - 722; Plants - 242; Viruses - 149; Other Eukaryotes - 2846 (source: NCBI BLink).1137e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
213  100%

Unigene MembersMember information