 |
Information for unigene UN41445
| FASTA Sequence |
| Unigene ID: UN41445 | Length: 843 |
SSR | | GGGTCTCAGAGTCCATCCATCGTTTCGTCGCACCATGTGGAGAAGAATCGTCTCCTCCGGTCTCAAAACCCTAGCCGCTGATGTCG
CCACTGCTTCTCCTCCTTGTCGATCGATAGCCGCCACCGCGAGACCCGCTGGCTTCTTCCTCGCTGCCAACCGATCAGCCATTTCT
GCTGCTTCTTCTTCTTCTTCTTTATCAGTCATCCCTCGCCATTTCAGCTCCGAACCAGTAGCAGAGACTTCTGCAAAGAAGAATGT
GGAGGATGTAATGCCCATCGCTACTGGACATGAGAAGGAAGAGCTTGAAGCTGAACTCGAGGGGAGGAGGCTGCTTGATATCGACT
TCCCTGAAGGTCCTTTTGGAACTAAGGAAGCTCCAGCTGTTGTGAAGTCCTACTATGACAAGCGAATTGTGGGATGCCCTGGTGGC
GAAGGCGAGGACGAACCCGATGTTGTGTGGTTCTGGCTGGAGAAAGGAAAGTCTTTTGAATGCCCTGTTTGCACTCAGTACTTTGA
GCTGGAAGTGGTTGGTCCTGGTGGGCCTCCGGATGGTCACGGTGATGAAGACCATGAGCACCACCACTGACTCCGGCACCGAGTTT
TGCTTTCTGTTTTCACTTTCTTTAAATATTTTTAGATTTTTTTTTTATTGGAATAAATATATATACATGCCGCTGGTATAACACAG
TTGAAAATGTTTTTGAGACTTTTAGAACGCAACATTTCGGTATCGGAAGTTGTCAAGATGCCTAAACTCTTACAACCGTTGTTTTA
CTTTTGTAAGAATTCTTGAATCAGATTCATTCTTGCCTTTTTTGATTACTATATATTCGCATTTTATTG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002882955 hypothetical protein ARALYDRAFT_479016 [Arabidopsis lyrata subsp. lyrata] | 781 | 5e-081 |
| NP_188185 cytochrome c oxidase subunit Vb [Arabidopsis thaliana] | 755 | 5e-078 |
| NP_001078161 cytochrome c oxidase subunit Vb [Arabidopsis thaliana] | 750 | 2e-077 |
| XP_002894400 hypothetical protein ARALYDRAFT_892286 [Arabidopsis lyrata subsp. lyrata] | 672 | 2e-068 |
| AAM64516 cytochrome c oxidase subunit, putative [Arabidopsis thaliana] | 577 | 2e-057 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P00428 Cytochrome c oxidase subunit 5B, mitochondrial | 158 | 4e-010 |
| P10606 Cytochrome c oxidase subunit 5B, mitochondrial | 157 | 5e-010 |
| Q5REG2 Cytochrome c oxidase subunit 5B, mitochondrial | 157 | 5e-010 |
| Q5S3G4 Cytochrome c oxidase subunit 5B, mitochondrial | 153 | 1e-009 |
| P19536 Cytochrome c oxidase subunit 5B, mitochondrial | 149 | 4e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LW15 AT3g15640/MSJ11_4 | 755 | 4e-078 |
| A8MRD7 Uncharacterized protein At3g15640.2 | 750 | 1e-077 |
| Q8LBW7 Cytochrome c oxidase subunit, putative | 577 | 2e-057 |
| Q9SSB8 At1g80230 | 576 | 2e-057 |
| A9PHK0 Predicted protein | 571 | 8e-057 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
