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Information for unigene UN41450
FASTA Sequence |
Unigene ID: UN41450 | Length: 716 |
SSR | | GGTCCACAGACATTTGGTGGACAAGTAGTTAACGAGAGCATGCACAGCACAACGGAAGAAAGAAAATAAAAGTCCAAAACCCTAAG
TAGTCTGCAAAGATAAAAGCAAAGCCCAAAACGGCTTAAGAAGTAAAATAAAGAAACAAAGCCCAAAACTCAAAACATAAATAAAT
AGCTTGTTCGTCAGTCAAGATGACCCTACACCTCCATTTCTCTTAGAGCAGTGAAGTGACATGGTTGCTCAAAACTGACGCCTTGG
TGGCCTAGCCTCAGCTTCAGAGACTCTAATCTGTCTTCCATCCAAATCTGCGCCATTCAAAGAGTTGATGGCTCGTGTGACCTCTT
GAGGAGAGCCGAGTGTCACAAACCCAAAACCCTCTGATCGACCAGTGTCCCTGTCGTAAATGACCCTAGCCTCAACAACTTTTCCT
TGCTCGCTGAACAAGCTCTCAAGAGCCGTGTCATCCACACCCCACGAAAGGTTACCCACATACACACGGTCTGATGAACCTGAGCC
TGAACCTGACCCAGAACCATAGCTAGAACGCTCGGACCCGTAGCTGGAACGCTCAGACCCGTAACCAGAACGTCCTGAACGCTGAG
ACCCGTAACCAGAACGTTCAGAACCGTAACCACCACGTTCCGAACCGTAACCACCGCTTCTCGGTCCTCTCGAGAATGATTCCTCC
CTCTTAGGGAGGAGGAGGAGGAAGCGGA
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GenBank top hits (Blast detail) | Score | e value |
BAA06518 RNA-binding protein cp29 [Arabidopsis thaliana] | 611 | 2e-061 |
BAA06519 RNA-binding protein cp29 [Arabidopsis thaliana] | 611 | 2e-061 |
XP_002877921 hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp. lyrata] | 562 | 9e-056 |
NP_190914 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 550 | 2e-054 |
NP_001190079 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 550 | 2e-054 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q43349 29 kDa ribonucleoprotein, chloroplastic | 550 | 1e-055 |
Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 448 | 7e-044 |
Q08937 29 kDa ribonucleoprotein B, chloroplastic | 365 | 3e-034 |
P49313 30 kDa ribonucleoprotein, chloroplastic | 364 | 4e-034 |
P49314 31 kDa ribonucleoprotein, chloroplastic | 364 | 4e-034 |
TrEMBL top hits (Blast detail) | Score | e value |
Q7GA50 Putative RNA-binding protein | 448 | 1e-042 |
Q8L941 Putative RNA-binding protein | 448 | 1e-042 |
Q8W214 Single-stranded DNA binding protein | 352 | 1e-031 |
C5WYM4 Putative uncharacterized protein Sb01g034120 | 341 | 3e-030 |
B6T531 Ribonucleoprotein A | 338 | 6e-030 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT3G53460.1 CP29; RNA binding / poly(U) binding | 551 | 8e-057 |
AT3G53460.2 CP29; RNA binding / poly(U) binding | 551 | 8e-057 |
AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 449 | 5e-045 |
AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 288 | 2e-026 |
AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 239 | 1e-020 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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