Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN41518

FASTA Sequence
Unigene ID: UN41518Length: 774 SSR 
GCAATCGATCTCAACCAACGCCAATCCAATTAAAAAAATTGTTGTATATGCAAAAACCTAAACTTAGAATCATCATAGATTCTTCC
TGGAGTCAATCCGTTTTCTACTTTTTTTGATTTTCACGAAGAACTGCATCGACAGGTGCCTTTTCTATCCAACTTAAATAAAGTAT
GTCCAATTACCAAGCGGAGGATGCTGCGTACATGGACCATGTTGTTGATGATGATGATGACATGGAAGATGTAGACGATGATTTAG
ATGATGACTTTCATGGTGATGACATGGCTGCTTCCGACTCCGATGTCGACGAGTTTGACTACTCTAGTAATAAAATAGCAGATACT
TCAGCTGAGCAAGCCCGGAAAGGGAAAGACATACAGGGTATTCCTTGGGACAGGCTTAGCATTACCAGAGAGAAATACAGACAAAC
TAGACTTGACCAGTACAAAAACTATGAGAATGTCCCCAACTCTGGTGATTCCTCCGGCAAAGATTGCATGGTTACGCAGAAAGGAG
CCATCTTTTATGATTTCTGGCGGAATTCAAGATCTATCAAATCAAGCATCCTTCATTTTCAGTTGAGGAATTTGGTATGGGCAACT
TCGAAGCACGATGTGTACCTTATGTCACAATTTTTGGTGAGCCACTACTCTACTTTGACATGTGGAAAGCATGAAGTTCTCAATGT
TCAAGTCATGTTTCCCCATCCGAGAAACATCCTGGGAGTTTGTTGGAGGGTTTACCAAGACTCAAGTGAGTACACTTGCAGTGAGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002894518 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]7619e-079
NP_564699 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]7563e-078
XP_002882817 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]7521e-077
NP_566453 transducin/WD40 domain-containing protein [Arabidopsis thaliana]7384e-076
XP_002330572 predicted protein [Populus trichocarpa]6131e-061

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5N4 Putative uncharacterized protein At1g556807562e-078
Q94AB4 AT3g13340/MDC11_137383e-076
B9N5K3 Predicted protein6139e-062
B9GHK2 Predicted protein6093e-061
B9HBS7 Predicted protein5734e-057

Arabidopsis top hits (Blast detail)Scoree value
AT1G55680.1 WD-40 repeat family protein7561e-080
AT3G13340.1 WD-40 repeat family protein7382e-078
AT5G56190.1 WD-40 repeat family protein5591e-057
AT5G56190.2 WD-40 repeat family protein5591e-057
AT1G78070.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G36070.1); Has 110 Blast hits to 110 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).3743e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  67%
 
111  33%

Unigene MembersMember information