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Information for unigene UN41523

FASTA Sequence
Unigene ID: UN41523Length: 1246 SSR 
GGTAGAAACTCTCATTCCATTTTCAGTAGCAAAAGTCGTAGTAATAAAACATAATCCTGTAAAGGGGAAACAAGGCTACAAAAATC
ACAAGCTTTTACAGAACAATTTGGAGAAGTAGGCTACAGAGACTGTAAACCGAGTCTCACTTTTATTTTACAACTGATTGAGATCC
ACCGGATTCTCCATGCACTGTCTCAAAATGAACTCCGCCCTCCTCCTCTTGTCATCTCTATCTTCCTCACGCAACGATAAAGGTCT
ATCTTCACCCTTCATCTGCAGCGTCAGATCCAAGGGCTCTCCAAGAAACTTCTTCTCAGTTCTTAGCTTAGAAAGAGCACCAGGTT
TCTTCTTCTTCTGCTGCTGCTGCTTCCACTCTCTTGCAGCCTCCAAGGCAGGAGCAAAGGCCTCCACCACTGATAAGCCATCTCTC
TTCAAAGAATCAACTTTATCCTCCTCCTCTTCACTCTCAGCTTCTCTGATATCGTCCTTCACAGTAGTACCATCCAACATATCTCC
CCACACACGGTCACCACCCGAAGAGATTCTACAAACAAGCTTCCTCTGCAGACTCAACAAAGCTCTCTCAGCCTTCCTCCTCTGCC
TCGCCTGCTCAATCTTATCCCCTCTAGGATCCAACCCTCTCTCAATCCACATAGGCGTTTCCTTATAAGTATGAGGATCAGGAAAA
GCCGGTAGCCATAAAGGAATATGCTTTCCAGGTGGAGTCTCACCAACCTCAACGAAACTAGGAACCTTCATCATCATCATCTTCCT
CCTCACAGGAAAACAAGGCAACGTCTGCAAAAACGGACTCTCTTCTTCTTCTTCTTCTTCTTCTTCATCACCACTCGAATTCACGA
ATTCGATAATCTCTCTAAGCCTAACCGAACGCAAGCAGCTCTCAAGCGAGGCGACTCTTTCTTCATCATCGCCGCCGCCGGATAAA
TCTTCCAGAGCGAGGACGATGTCGAAGACGTTACACTGACTCCTACCGTTTAGGTTAGCGAATGAAGTAGCGGATTTACCTAGCCC
GAGAACGTACTGGATCGCGAATCCGGTTAGGGATTCGAGCGGCGGATCCTTGAAATGGCTGTAGCCGACGCTCCCGCAGATTTGAG
CCACTGCCGATTTGGCGGCGGCGTGGGTGAACTCGTACGACGAGGAAGAAGGTGGATCCTTTATGTCACCGTCGTCGTGTGTTGTT
CTCTCTAAGCTCATTGCTTCCTCGTAATCTTTCTCTGTATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002867123 hypothetical protein ARALYDRAFT_491232 [Arabidopsis lyrata subsp. lyrata]11805e-127
NP_567964 TBP-associated factor 8 [Arabidopsis thaliana]8122e-084
AAM61252 unknown [Arabidopsis thaliana]7981e-082
CBI21214 unnamed protein product [Vitis vinifera]5372e-052
XP_002326367 predicted protein [Populus trichocarpa]5121e-049

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SYZ9 Putative uncharacterized protein AT4g3434011652e-125
Q8LFR3 Putative uncharacterized protein11518e-124
B9MTE6 Predicted protein5121e-049
B9IFP9 Predicted protein4932e-047
A5C8M1 Putative uncharacterized protein3481e-030

Arabidopsis top hits (Blast detail)Scoree value
AT4G34340.1 TAF8 (TBP-ASSOCIATED FACTOR 8); DNA binding11685e-128
AT1G31240.1 DNA binding1667e-012
AT3G02160.1 DNA binding1353e-008
AT5G15570.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G02160.1); Has 143 Blast hits to 143 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).1353e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
201  33%
 
82  67%

Unigene MembersMember information