Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN41536

FASTA Sequence
Unigene ID: UN41536Length: 732 SSR 
ATCATGCAAATGTAAATACGATTCATGTTCAGACTATTCAGAGAAAACACACAAATCTTTACCCACTGATTTGCTTACAAGCTTCT
AGTCAGAAAATGAGTTTTAGATAATCATCAAATACATAGGCATAACACAAAGAGATCCATCCTAAACAAAGAGCTCTCTCACTAGC
GTCTCTTCTTTTATCAAACACAGACTCTCTCTCGAGAGAGATACTTAAAAGAAACAGAGAAGTAAGGGCGAGTGGTTAAGAATCTA
TTATTCCTTGGCGGATTCGTTGATGAGAGACTTGTGGATGTGAGGGATCACACCTCCTCCAGCAATGGTTCCCTTGATGAGGGTGT
CGAGCTCCTCGTCTCCTCTGATAGCCAGCTGCAAATGCCTTGGAGTGATCCTCTTCACTTTCAGATCTTTGCTCGCGTTTCCAGCC
AACTCAAGAACCTCCGCAGTCAGGTACTCCAGAATCGAAGCCGTGTAGACAGCGGCAGTGGCACCAACCCTTCCGTGTGCTGAAAC
TCTCGTCTTGAGTTGCCTATGGATACGACCCACCGGAAACTGAATACCAGCACGAGCAGAGCGAGTGATGGGTTTCTTCTTGTTGT
CCTTGTCTTTGTCCTTGTTACCGGCCATGGTCTTGGTAGCGATGAGACCTTTACCTCCCTTGCCTGCCATGTTCGCTCGCTGTTAA
TGCTGCCCACTTCTAGATCTGAGACGGAGAGAGAGAGAGAGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_191019 histone H2A [Arabidopsis thaliana]6353e-064
XP_002307619 histone 2 [Populus trichocarpa]6022e-060
XP_002300810 histone 2 [Populus trichocarpa]6013e-060
ACU14445 unknown [Glycine max]6004e-060
NP_001141633 hypothetical protein LOC100273753 [Zea mays]5995e-060

Swiss-Prot top hits (Blast detail)Scoree value
O23628 Histone H2A variant 16352e-065
Q8S857 Probable histone H2A variant 25974e-061
Q8H7Y8 Probable histone H2A variant 15965e-061
Q9SII0 Probable histone H2A variant 25714e-058
Q84MP7 Probable histone H2A variant 35662e-057

TrEMBL top hits (Blast detail)Scoree value
Q0WS87 Histone H2A6352e-064
A9PG14 Histone H2A6022e-060
A9P990 Histone H2A6012e-060
C6SYX2 Histone H2A6003e-060
B4FXB2 Histone H2A5993e-060

Arabidopsis top hits (Blast detail)Scoree value
AT3G54560.1 HTA11; DNA binding6413e-067
AT2G38810.1 HTA8 (HISTONE H2A 8); DNA binding5778e-060
AT2G38810.3 HTA8 (HISTONE H2A 8); DNA binding5778e-060
AT2G38810.2 HTA8 (HISTONE H2A 8); DNA binding5778e-060
AT1G52740.1 HTA9 (HISTONE H2A PROTEIN 9); DNA binding5624e-058

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
124  100%

Unigene MembersMember information