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Information for unigene UN41677

FASTA Sequence
Unigene ID: UN41677Length: 1303 SSR 
GTCGACTCGACTCGTTGGGTCTCTATATGGGGAGCCCGATTTAGGGTTTCATCCATTAATCCATCGATTCACCATCTCATCTCCCC
CTCAAAGCTCCAACACTTTCTCCGTTTGGGTTTTAAAGTTAAGACCATGCCTAAAGAGAGGAAACAACGCTCTGTATCTCATGAAA
GGCTTAGAGGATCGCCTATGTATTGTGAATCAAGCCGTGCTCTGAAGCCTAGTGAGAAGCAAGTTAAGGAATGGGAAGAAGCTAGA
TGTCCTGTCTGTATGGAACATCCTCACAACGGAATCCTTCTCGTTTGTTCTTCCTATGATAACGGCTGCAGGCCTTACATGTGTGA
CACTAGCCACCGGCATTCCAACTGTTTCGATCAGTACCGCAAAGCTTCTAAACAGACTGAAGGTGCAGCAGTAGCTTCAGCTTCTG
AGGTGAATCCGAGAGAGGCTGAAGGCGTTGTGGCAACAGAGGCGGATCAAGAGAAAGGCAAACCGAAGCTTACTTGCCCGTTATGC
CGTGGAGATATTAAAGAATGGGTAGTTGTTGAGCCTGCTCGATGTTTCATGAACGCAAAACATAGAAGCTGTTCTTCCGAGACTTG
TGAGTTCAGCGGAACCTCTGACCTGAGAAAGCACGCGAGGTTGCTGCATCCAGGAGTGAGGCCATCAGAGGCAGATCCGGAGAGGC
AGAGAAGCTGGAGGAGGCTAGAAAGGCAGAGAGACTTGGGTGATTTGCTTAGCACACTGCAGTCTTCTTTTGGAGTAGGAGGAGAA
GAAAGAAGCAGCAGCAGCAACGAAGATGGGATCATGTCGTTTGATGATGGTGGTTGGCTTACAGTGTTCTTCCTCATCCGCGTGTT
TAGGCCAGAGTCAAGTGGTGGGGCAAGGAGTAGTAGTAGCAGCTGGTCAGGTACGTCTAGAGCTAGGTCACATATAGGTGTGAGGA
GAAGATCTTCAAGGCTTTGGGGAGAGAGCTATGAAGGTGGTGATACAGGAACACCAGCAGCTAGAGATGGAGAGAACAATAATCAG
TCTTCTGATGGACAAGAGTCTGGAACTCAAAGACGCCGTGTCAGAAGAAGATATTACATTGAGGATGATGATGATGATGAAGAGGC
GTGATGGCTCTCTCTCTCAAAACGTACAATTTGGGTTTTTAACTTTATGAAACAAAATATTGGGGGAAACTTTGTATTAATAACCC
CCAACTCGTTAAAACCTATTCTGCAAAATTTCTTTGCAGATTGAAAAATGTTTCTATTGAGAAACAAAATGCTACAAAATAATTTA
ATACCCTTTTACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002875291 hypothetical protein ARALYDRAFT_904770 [Arabidopsis lyrata subsp. lyrata]8132e-084
NP_566784 uncharacterized protein [Arabidopsis thaliana]7451e-076
XP_001762155 predicted protein [Physcomitrella patens subsp. patens]5506e-054
XP_001765033 predicted protein [Physcomitrella patens subsp. patens]5425e-053
ACU20260 unknown [Glycine max]5221e-050

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LUA0 AT3g25910/MPE11_67451e-076
A9S773 Predicted protein5504e-054
A9SF80 Predicted protein (Fragment)5424e-053
C6TEK8 Putative uncharacterized protein5227e-051
B9SZV8 Putative uncharacterized protein5138e-050

Arabidopsis top hits (Blast detail)Scoree value
AT3G25910.1 zinc ion binding7537e-080
AT3G24740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3172e-029
AT3G24740.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3172e-029
AT1G68140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 145 Blast hits to 136 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2681e-023
AT1G68140.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 157 Blast hits to 148 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2681e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information