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Information for unigene UN41684

FASTA Sequence
Unigene ID: UN41684Length: 1504 SSR 
AAACAAACAAACAAACAAACAAACAAACAAACAAAAAGAGGAATGAAAAAAGTTTTTCTTTTCTGACAAATCTGATACAAAAGAGA
GTTTGATATTTATATATATAAGAAAAAAAAATAGCAATGTTCAGTTTTTAGGCTTGAAAATCTTTATTCGAGTTCCATACAGGAGC
TGTCGTCTTTTGCACGCCCACACCAACACCACCACCATCTGATAACACTCCGCTTCCATTTTCAGCTGCTATTAGCGGATCCTTCT
CGCTCTCTTTCATCTGAGGCAACTGGGTTGATGTTTCACTTGCCTTCTGCTGAGTTTCAACCGAGCAGAAATAGGAATAAACAACC
ATTCCAATCACAGCCACCATAATACCAAGAATGTTGCGCCAATTGAATGGGTCCTTCAGCAACACATAGCCAAATGCTAGAACCAG
GCATGTTTTTAGATGTCCGAGAACCTGATATGTGACCGGAGACGTTTTCCCAATGACCAGAAAAGTGCTGAAGTTTACAGAGACTG
ATATCATGCAGGACAGGACGATGAAGAACACAACTTGAGAAGTGTACTTGAAAGCAAACACGTTCTGGTTGGTTAGGAGCCCATCT
AAAAATGGGCCAGTGACAAAAAGTGTAATTGCTTGATAAGGGCAAGACTGATAAAGAAGCTGCGTGGATGAAACTTTGAACTTCTT
CTGGATGGTATTTGTCATAATTTGAGCAACGCAAGTTGTGATAACAGCCAGCACCGACAAGACTGAACCCAGCATATTAAGCTGAA
GATCTGTGACGGTCGCAATTCCAACACCAAGGAGAAGGATGGTTAATGAAAACTGAATTTTTCGACTGAACTTTTTCCTGAAGAAG
AGGGTCTCCAAGAGAACAGTACAGGGGATGATTGCTAGTTTTGTCATCTGGTAAAAACCAACGGAATTAAAGCCAAGGCTGAGGTT
TAATAGTCCAATGGATATCCCATTCAGTATGCCAAATCCCATCGCAGCTCGTGGATCAAAAGGTTTGTGTTCAAACATCTTCATCC
ATAGTGCCACATGAAGGGAACAAAACGTGACCAATAGATGCCAACTTGTCAACGTAGTCGCGAAGGTGAAGCCAAGGGTGCTAATA
AGCGCCTTGTTACAGATCACGATCGACACAGGCGACACAACGGACAAACTCAAAGCGCCGATTGTTCCAAGCTGGAACTTCTGGCC
CTCGCTCATCTTCGCTCTCCTAATTTTTTTTTATTTCTCTCTCTCGCTTCAGTCACGATCTACAACGATCTCATTCGTGCATATAA
TCTATAAGCAAATGCGAGAGAATCGAAGCTAAAGGAAGCTCAGGTGAGAACGAGAGAGGATTCAAACTTCGACGGAGGAGAAGAGA
TTCAGAGATTCCTATTTTTCGCAATCTGACGATTGTCTTCACTCACCACCGTACAGAGGAAAATAGTGAGAGAGAGAGGACGATGA
CGGTTCCCGTGGGGCCCTCGGTAAATTTACCGCGGGCGATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_172172 nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]17301e-190
XP_002892363 hypothetical protein ARALYDRAFT_470711 [Arabidopsis lyrata subsp. lyrata]17254e-190
NP_001184926 nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]16824e-185
NP_001154542 Nucleotide/sugar transporter family protein [Arabidopsis thaliana]16036e-176
XP_002881111 hypothetical protein ARALYDRAFT_320800 [Arabidopsis lyrata subsp. lyrata]15911e-174

Swiss-Prot top hits (Blast detail)Scoree value
Q8RXL8 Uncharacterized membrane protein At1g0689017394e-193
Q1JQ66 Solute carrier family 35 member E34276e-041
A4IFK2 Solute carrier family 35 member E34123e-039
Q7Z769 Solute carrier family 35 member E34008e-038
Q6PGC7 Solute carrier family 35 member E33882e-036

TrEMBL top hits (Blast detail)Scoree value
Q8GUJ1 At2g3046016034e-176
B9RX14 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative15864e-174
B9INM8 Predicted protein15335e-168
A9PAL1 Putative uncharacterized protein15319e-168
A9PIW7 Putative uncharacterized protein15319e-168

Arabidopsis top hits (Blast detail)Scoree value
AT1G06890.1 transporter-related17351e-193
AT1G06890.2 transporter-related17351e-193
AT2G30460.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 782 Blast hits to 581 proteins in 90 species: Archae - 0; Bacteria - 6; Metazoa - 140; Fungi - 34; Plants - 501; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).16094e-179
AT2G30460.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2).16094e-179
AT2G28315.1 LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 1852 Blast hits to 1847 proteins in 207 species: Archae - 0; Bacteria - 58; Metazoa - 582; Fungi - 250; Plants - 685; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).11435e-125

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
124  50%
 
112  25%
 
62  25%

Unigene MembersMember information