RadishBase

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Information for unigene UN41718

FASTA Sequence

Unigene ID: UN41718	Length: 1185	SSR
GGGAAAGCCAAGAAGCTCTAGGTTCCTCTGCTCATGCTCATGGAGGAACCCATCATAGAGAGCTTCTTCTCTCTCCCTAATCTTCC TCCTGAAATGATGGAAGAGATTCTCTTGAGACTACCTGTAAAGTCATTGAAGAGATTCAGATGCGTTTGCCTCTCGTGGAGATCTT TGATCTCAGAGTCTCTGTTTACTCTGAAACACGCTTTGATGTTGGAGGCCTCCAAGGCAACCACTTATAAGAAGAGTCCATACGGA GTCATCACAACGTCTCGGTACCATCTCAAGTCTTGCTGCGTCCACTCTCTGTATAATGAGCCAATGGCCAACGTCTTTGAGCACGA TGGTGAGCTTTTAGGCAGGGATTACTACCAAGTCGTTGGGACCTGCAATGGGTTGGTCTGTTTCCATGTAGATTACAACAAAAGCT TCTATTTGTGGAACCCGACCATCAAGGTTCAACAAAGATTGATTGGTTCAGATCTTGAAACGGGAGATGAGGTTGTTGTAAACTAT GGATTTGGTTATGATGAATCTGAAGATGACTATAAGATAGTTGCATTGTTGCAACAAAGACACGAACTGAAGACGAGGCAATGATC TACTCAACGAGACAAAAGCTATGGAGAAGAAGAAGCAGCAGCAGTAGCACTTGTTTTCCATATGGAGTTGTTCTTGCTAACAAATC AAGATCCGGTATCTACATCAATGGAACACTAAACTGGGCAGCCACTCATTCCTCATCATCATCATCAGTTTCTACCATCATATCAT ACGATATGGCACGAGATGTGTTCAATGAGCTTCTTGGACCAGGTTCTTGCAAGAGAGGATGTTTTACATTGACGCTTGGAGATTTG AGAGGATGTCTTTCCATGGTGTGCTATTGCAAAGGAGCAAATGCAGATGTTTGGGTGATGAAGGAGTTTGGAGAAAGAGATTCTTG GTCTAAACTCTTGAGCATTCCCGGTTTGACCGAGTTTGTTAGACCGCTTTGGATCTCAAGAGGTTTGGTGGTTTTGTTGGAGTTTA GATCCGGTTTAGCTCTCTACAACTGTTCCACTGGAAAGTTTCAGTACCCAGTTTCAGACAGCTTGAGTGGTTGTCGGGACGCTAAA GTCTATGTCAAGACATTGGTTTCTCCGAGTGACCTTTAAGAGTTGGGCTCTAACCAGATCTATAAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002885602 F-box family protein [Arabidopsis lyrata subsp. lyrata]	781	9e-081
NP_189030 F-box/kelch-repeat protein [Arabidopsis thaliana]	758	4e-078
ACU18857 unknown [Glycine max]	314	1e-026
XP_002312730 predicted protein [Populus trichocarpa]	304	2e-025
XP_002525835 conserved hypothetical protein [Ricinus communis]	234	2e-017

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LIR8 F-box/kelch-repeat protein At3g23880	758	2e-079
Q9SUY0 F-box protein At4g22390	159	5e-010
Q9SU30 F-box protein At4g12560	151	4e-009
Q9ZPS1 Putative F-box protein At2g02030	140	8e-008
Q9LUN5 Putative F-box protein At3g17620	134	4e-007

TrEMBL top hits (Blast detail)	Score	e value
C6TAK5 Putative uncharacterized protein	314	8e-027
B9HMA7 Predicted protein	305	9e-026
A5C6H9 Putative uncharacterized protein	269	1e-021
B9SIL6 Putative uncharacterized protein	234	2e-017
A4UV34 F-box domain-containing protein	226	1e-016

Arabidopsis top hits (Blast detail)	Score	e value
AT3G23880.1 F-box family protein	759	1e-080
AT4G22390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12560.2); Has 662 Blast hits to 662 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	159	4e-011
AT2G02030.1 F-box family protein	140	7e-009
AT3G17620.1 F-box family protein	134	4e-008
AT1G12870.1 S locus F-box-related / SLF-related	126	3e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	3			100%

Unigene Members	Member information