 |
Information for unigene UN41742
| FASTA Sequence |
| Unigene ID: UN41742 | Length: 1370 |
SSR | | GGACTTTTCAAAGCTCCCACATTCACTCTCCCATTCGACTTCTGAGAGCCATACAAAACAAACACAACTCTTGTCCGAAATCATCC
CTTCAAACCTTTTGATTCAGATTTCTTCCATGGATTCGTGTAGTCAATAAGGTCGAAAAACCCATCAAAGCGAAAACAGTTTTCTC
GTGGTCGATTCGATTTCACCCAGAATCCGAAAATGTCGACTTTGAACCCGTTTGATCTCTTGGGAGGTGACGCTGAGGATCCAAGC
CAGATTGTTGTGTCTTTGCCGAAGAAGGTCGAGAAAGCAGCTCCTGTTCAGCCTCCTGCTAAGGGTGCTAAGGTTCAGACCAAGCA
GCCTCCTACTTCTCAAGCTGTGAGAGAATCAAGGAATGCTCCTTCAGGAGGTCGTGGTGGTGGTGGTGCGGGACGTGGGCCTCCTC
GTGGTTCATTTAACCCCGGAGGAGACAGACTTAATGATCCAAAGGATGGAGAAAGGACTGGTGGATTCCGTGGATACCGCGAAAGT
GGTGGTGGTCGTGGAGGTCAACGAGGTGGATTTGCCAATGGTAGAGCTGGTGATGTTGAAGGCCGCCCAAAGAGGGCCTTTGAGCG
CCGTAGCGGGACAGGTCGTGGCAATGACCTGAAACGTGAGGGTGGTGGTCGTGGAAACTGGGGTACCCCTGAAGATGATATTCCAC
CACCAACGGAGGAATCCACAACAGAGGTTGAGAAGAGCTCTGTTGCTCAGAAGGAAGGCGGTGGGGACAACACCACCGATGCAAAG
AATGAGGCTCCTGCTGATGAGGAAAAGGAGAAAGAACCTGAAGACAAGGAAATGACATTGGAAGAGTATGAGAAAATTCTGGAGGA
GAAGAAGAAAGCTTTGCAAGCCACAAAGGTTGAGGAAAGGAAAGTTGATACCAAAGTGTTTGAGTCTATGCAGCAGTTCTCTAGCA
AGAAGGCCAACAACGAGGAAATTTTCATCAAGCTGGGATCCGACAAGGACAAACGCAAAGATGCTGCTGAGAAAGGAGAGAAGGCT
AAGAAGTCGTTGAGCATTAACGAGTTTTTGAAGCCTGCTGATGGAGAGAGATACAACCCAAGAGGTGGTTACCGTGGAAGAGGAGG
CCGTGGACAGAGAGATGGAGGAGGCCGCAATGGTGGTCGTGGACAGAGAGATGAAAAAGTGAACGGAGGAGCTCTTGCTCCGGCAA
TCGGAGACAGTGCTCAGTTCCCATCTTTGGGCAAATGAAGACCCCTCCTTGTCCTTCAGCATTTATCTATCTATCTCTCTACTGTC
TTAGTTTAATTTTGTTCTTAATTCTATCATTTTTGTTACACTTTTTCTACAGAACAAGTTTGAGTGCTTTTTTAGTTACG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD65038 nuclear RNA binding protein, putative [Brassica oleracea] | 1436 | 1e-156 |
| ABD64914 nuclear RNA binding protein, putative [Brassica oleracea] | 1302 | 4e-141 |
| XP_002870099 hypothetical protein ARALYDRAFT_493124 [Arabidopsis lyrata subsp. lyrata] | 990 | 6e-105 |
| AAM64962 nuclear RNA binding protein A-like protein [Arabidopsis thaliana] | 964 | 6e-102 |
| ACG24258 plasminogen activator inhibitor 1 RNA-binding protein [Zea mays] | 956 | 5e-101 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8BH43 Wiskott-Aldrich syndrome protein family member 2 | 144 | 3e-008 |
| O08816 Neural Wiskott-Aldrich syndrome protein | 141 | 7e-008 |
| Q9FPQ6 Vegetative cell wall protein gp1 | 132 | 8e-007 |
| Q7XTS4 Protein argonaute 2 | 129 | 2e-006 |
| Q9T0K5 Leucine-rich repeat extensin-like protein 3 | 129 | 2e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9M2 Nuclear RNA binding protein, putative | 1436 | 8e-157 |
| Q2A9V8 Nuclear RNA binding protein, putative | 1302 | 3e-141 |
| Q8LB56 Nuclear RNA binding protein A-like protein | 964 | 4e-102 |
| B6SHC5 Plasminogen activator inhibitor 1 RNA-binding protein | 956 | 4e-101 |
| O23593 AT4g17520/dl4795w | 953 | 8e-101 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47210.1 nuclear RNA-binding protein, putative | 1040 | 4e-113 |
| AT4G17520.1 nuclear RNA-binding protein, putative | 954 | 3e-103 |
| AT5G47210.3 nuclear RNA-binding protein, putative | 859 | 4e-092 |
| AT4G16830.1 nuclear RNA-binding protein (RGGA) | 790 | 4e-084 |
| AT4G16830.3 nuclear RNA-binding protein (RGGA) | 671 | 2e-070 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
