 |
Information for unigene UN41764
| FASTA Sequence |
| Unigene ID: UN41764 | Length: 575 |
SSR | | GAAGAGAATGCAATAGTAATCTTTAGGCAAATACCATCCTTTAGATTCGATTCCACGAAACTCCATAATTTCTCAAACTTTTTACT
ACATTGCAATTACACGATAAAGAAGAGAAGAAACCATTGTCAGTTAACAGAAGAAGAAGAAGAGCTCAATTCAGCAAATGCTTGGG
AGACAATCAAAAAGACACCATCTACTGCTCCACCACGAGAGTGTTTCTTGAGACTTGAGAGAATAGTGTGATTACTTTCCCGTGTT
CATCACCAGCGTTATGTTGTCTCCTTTAAGTAGAATCCTTCCAAGTTGTTTTCTGGTGTTCTTCTTGATGCTCACTTCTTCAGCTT
CATCCAACACTAGGTTCATGTATTCGTCGAACCCAGTGATTCTTCCTTCAATCCTCAAATCTTTCTGCTCAAAGAGCCAAATCTGG
ATCCTCGCTTTGCTTTGAAGAAACCTAAAAATCAAGTTGATAGGTTGGGTCATAATCCTTTGAACTTTGGTGCCCGCCATTGCTCC
CGACTCTCTCAATTCTCTCTCAATCTTCCCAACTCTTTAAACCCTAAATCAACACCCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_179464 putative small nuclear ribonucleoprotein [Arabidopsis thaliana] | 425 | 4e-040 |
| NP_567844 small nuclear ribonucleoprotein E [Arabidopsis thaliana] | 414 | 8e-039 |
| XP_002454946 hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor] | 412 | 1e-038 |
| NP_001045754 Os02g0126700 [Oryza sativa Japonica Group] | 411 | 2e-038 |
| XP_002278114 PREDICTED: similar to small nuclear ribonucleoprotein E [Vitis vinifera] | 407 | 5e-038 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A4FUI2 Small nuclear ribonucleoprotein E | 310 | 5e-028 |
| P62303 Small nuclear ribonucleoprotein E | 310 | 5e-028 |
| P62304 Small nuclear ribonucleoprotein E | 310 | 5e-028 |
| P62305 Small nuclear ribonucleoprotein E | 310 | 5e-028 |
| Q9VLV5 Probable small nuclear ribonucleoprotein E | 305 | 2e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZV45 Putative small nuclear ribonucleoprotein E | 425 | 3e-040 |
| Q8LAK5 At4g30330 | 414 | 5e-039 |
| C5XL26 Putative uncharacterized protein Sb03g001950 | 412 | 9e-039 |
| B8AGZ5 Putative uncharacterized protein | 411 | 1e-038 |
| Q6Z2M5 Os02g0126700 protein | 411 | 1e-038 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G18740.1 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative | 426 | 2e-042 |
| AT4G30330.1 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative | 415 | 3e-041 |
| AT2G18740.2 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative | 344 | 5e-033 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
