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Information for unigene UN41787
| FASTA Sequence |
| Unigene ID: UN41787 | Length: 766 |
SSR | | TTTTTACGATTGCGTCCCAATGACCCGTCGATATCCTCTCCGTAAAAGTCTCCGGCGACGAAGGTCAGCACCTCGCCGCAATTTCA
TTTCCTCCGATGTAGAAACGCACTCGTCTTCTTCCTTCTCCTCCTCCTCCTCTTCCCATGGGTTTGAAGCCAATGAGAAACCCAAC
CTTGTGGAGATCAGCCACGACGAGCTCACAAGCGAGATAGACACCGACGCCGCGATTGATTCAACACACAAAGATAACGACTTGGT
TTTAACCGATTCGGTTCGGGTTGACCCGGTTCATGAAACCGAAAAATCCACCGTGAGCGATGCACTATCTCCACCACCACCACCAC
CGAAGAAGAAGCTCCAAGAACGTAAATCAACAGACGGGTCTCCGTCTCTCATTGGTCTACTCTTCAAAGCAATCGTAAAGTCTCCT
CCTTTCTTCCTCACCTGCTCCCTCCTCTTCCCTTTCGATCCCTTCACCACCTTCAAGCTCGCCAGACGACTCTTACTGTCCCAAGT
TTCACTCTTTACCGAAATTTTATCTCGAACTCTTAAGCTGAGTGGTGGGTTCAAAGATACCAAACGCACTGTGAACGTTGCGTGCA
AGTTCGGATGGGGTTTGTTTAGGGCCTTTTATGTGGGCCTTGTGTTGTTTGGTCTGTTGGTTTCAGCGTTTGTGCTCGGTGGGTTT
GTGATAACCGTGTAGCCGACAACCGTTTGTGATCAAGAGAGTCTTGATTTCGATACACAGATAGTCCTGAGTGTTGTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890828 hypothetical protein ARALYDRAFT_890503 [Arabidopsis lyrata subsp. lyrata] | 220 | 5e-016 |
| NP_174269 Putative adipose-regulatory protein (Seipin) [Arabidopsis thaliana] | 217 | 1e-015 |
| AAC26703 unknown protein [Arabidopsis thaliana] | 133 | 6e-006 |
| NP_850230 Putative adipose-regulatory protein (Seipin) [Arabidopsis thaliana] | 133 | 6e-006 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O64707 Putative uncharacterized protein At2g34380 | 133 | 4e-006 |
| Q8L615 Putative uncharacterized protein At2g34380 | 133 | 4e-006 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G29760.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34380.1); Has 396 Blast hits to 327 proteins in 54 species: Archae - 0; Bacteria - 233; Metazoa - 115; Fungi - 10; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | 217 | 5e-018 |
| AT2G34380.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29760.1); Has 168 Blast hits to 163 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 17; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 133 | 2e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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