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Information for unigene UN41790

FASTA Sequence
Unigene ID: UN41790Length: 1354 SSR 
AGCAAGAGAATATAATCAAAACTAATAGCATATAAGATATAACAAAACGAGTTTTCTTTCTTCAAAAGTTAAAGCCTCAACAACAA
AGAGAAAACAACAAAGAAAATGAAATGTAAAAAAAAAAAAGTATTTCAAAGGGAAGAGTCTCTGCTCGTATGTAAATGAGGCAATA
AGTTTTTAAAGTCTCATCCTCTAAAAAGAAACTTTAAAAAGATCCCAAACTACAGCAACAACGCAGACCTCCCTTGATCTTAGAGA
AGGTAGTAGTAACCCAAGACAAGAAGCATCAGTACCGCAAGAGCAGCTGGAGCAGCCCATACCCAGTAGTTAGTCTGCTTCTTACG
CTTGATCATTGGTCTCGGTAGTGTTTCTGGTCCTCCTCTACTGCGGATCCTGTTCCTTACTGGTTTCGCCTGGACTTTTTCCTTCT
GTGGTTTCTCCTCCACTGGAGCTTCAATATCCTCTTTCTCAACCTCAGAGGCTTCTGGAACTTCCTCAGAGATGGCATCGTATTTG
TTGCTGCCTCCTGTCTTCTTCTTGGCCGCCTTCTCTTGCTCCTTTTTTTCTTTCTTCTCAGCTTCCTTTTGAGCTCTTATGGCAGC
TTTAGCAGCAGCTTTCTCCGCCTGCTTCTTCTTCCTTTCCATGGCTAGCTTGGCTTTAGCAATCTCCTCTTGCTTTCTCATCTCTT
TCATCGTAGCTTCATCTACTTCCTCCTCCTCTTTCTGCGGCTTTCCAAGACCATATACTTCTTCTTCTTCTTCATCATCATCAACA
ACAACGTTCTTTGCTTTCACTGCATCTTTAGTTTTCTCGGTCTTCTGAGCAACAGGAGCAGCGTCTGGTTCAGGTGCAGACACTTG
CTCCTCCTTCGGCTGCTGCTTCACTTTAGCTTTAGAGACAGCCTCGGTTGCAGAAGGAGCTGCCTTTGCTTGTGGTACCTCTGGAG
CAACAAGAGGCTTCTCGTCAGGGTTCCTCATCCTTCCATCTCGGCTCATCTGCCTAGCATCAAGCGACCCCAAGAGTCTCTTCTCG
TAATCCTCTCTGAAGTTCTTCTTACTGCACCAGAGAGAGAAAAACTTCTCAACCTCTGTATTGGAGAGGGCCTCAAGCTCATCAAC
ATTCTTTTGTGCAGCCAACTCTCTAGCTTTGTTCAGCACTTTACGCCCTTGGTAAAAACCTGAGTTCGTCTCATCTCTTTGCTTCC
TAAGCTCAGAAATGTTTGAATAAGCTTTGTCCTTCTTCTCAGTCACAGTCTTGAGCTCATTCTCCAGCACCTGAATCTCATCTTTA
GTTGCTTTCACCTTCTCACTCAGCTGATTAATCCTTGCGGAAATCGCTTGCCTCTCTTTCTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_194480 proton pump interactor 1 [Arabidopsis thaliana]13544e-147
CAB43882 proton pump interactor [Arabidopsis thaliana]13544e-147
XP_002869559 hypothetical protein ARALYDRAFT_328945 [Arabidopsis lyrata subsp. lyrata]13383e-145
BAH19433 AT4G27500 [Arabidopsis thaliana]10212e-108
XP_002285016 PREDICTED: hypothetical protein [Vitis vinifera]8893e-093

Swiss-Prot top hits (Blast detail)Scoree value
Q869E1 DNA ligase 11793e-012
P54696 Myosin-H heavy chain1703e-011
Q54LY8 Uncharacterized protein DDB_G02862991669e-011
P36044 Protein MNN41596e-010
Q01042 Immediate-early protein1571e-009

TrEMBL top hits (Blast detail)Scoree value
O23144 AT4g27500/F27G19_10013543e-147
Q9SZS5 Proton pump interactor13543e-147
B9DFB6 AT4G27500 protein (Fragment)10211e-108
B9N1G2 Predicted protein8283e-086
B9HZV0 Predicted protein8141e-084

Arabidopsis top hits (Blast detail)Scoree value
AT4G27500.1 PPI1 (PROTON PUMP INTERACTOR 1); protein binding13747e-152
AT3G15340.1 PPI2 (proton pump interactor 2); protein binding5791e-059
AT3G15340.2 PPI2 (proton pump interactor 2); protein binding5791e-059
AT5G36780.1 AT5G36780 and AT5G36690 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.5583e-057
AT5G36690.1 AT5G36690 and AT5G36780 represent identical copies. The duplication within clone F27C7 is believed an artifact with only one true copy existing.5583e-057

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  33%
 
112  67%

Unigene MembersMember information