 |
Information for unigene UN41801
| FASTA Sequence |
| Unigene ID: UN41801 | Length: 1476 |
SSR | | GGGGTCGTCGTCGTCGTCGAAATTCAAATACACTCAATCAGCGAGCAGAGAAGGGGACTACTAATTCGTAGCGACTTGGAAGATGA
GGCCGAACATTGTTACCGAGGCTTGGATTCAAACAAGAGTTTCACAATGGTGGAATGCTATACCATTCCTCACCTCATCAGTGGTT
GTAGTTTGTGGCCTCATTTACCTCATATGCCTCTTAACTGGATACGACACTTTCTATGAAGTCTGCTTCTTACCTTCTGCAATACT
ATCCCGTTTCCAAGTTTATAGGTTTTACACGGCCATTTTATTCCATGGATCCATGCTTCATGTTATGTTCAACATGATGGCTTTGG
TTCCTATGGGATCTGAGTTGGAGAGAATCATGGGATCTGTCCGCTTGTTTTACCTCACAATTTTGCTGGCAACGACCAATGCCGTA
TTGCATCTTCTTATAGCATCGCTGGCGGGATATAATCCTTTCTATCAGTATGACCATCTCGTGAACGAGTGCGCGATTGGATTCTC
TGGAATCTTGTTCTCAATGATTGTCATAGAGACAAGTCTCAGTGGAGTCACCTCTAGAAGTGTGTTTGGTCTCTTCAACGTGCCCG
CTAAACTATATCCATGGATCTTGTTGATAGCATTCCAACTTCTCATGACAAATGTTTCACTGCTTGGTCACCTATGTGGCATCTTG
TCTGGATTTGCATATTCTTATGGTCTTTTCAATTTCTTGATGCCTGGCTCTTCATTTTTCTCCAACATTGAGTCAGCCTCATGGAT
GGCTAGCTGTGTAAGGCGACCCAAATTCATTATGTGCACTGGTGGAAATCCTTCCAGTTACATGCCAACTTATTCTGTACAAAACA
CGACATCCAGTGGTTTCTCTACAGGAAATGCTTGGAGATCCTTGTCCTCGTGGCTGCCACAGAGGGAAGCATCTAATCAGTCCTCT
GAGGATATTAGATTTCCGGGAAGAGGTAGAACTCTTAGCGGTACTACCCGTGATCCAACCCCTCCAGCGGGAGAAACAAACCCAAA
CCTCCATGCTAGACTCTTGGAAGATAGCACTCCTGACCGCCTTTCTGATGCAACTGTGACTGGCATGACAGAGCCAATCCCTGCCG
CAAGACAGGTGCCAATAGCAAATGCAGCAGTCCTGCCTCATTCCCAGGGTCGTGTTGCTGCTTTTGAAGAACAAATCCAGAAGCTC
GTTGCCATGGGCTTCGAAAGGACACAAGTGGAGGTTGCACTTGCAGCTGCCGATGACGATCTAAACGTAGCTGTGGAGATCTTAAT
GAGCCAACAGGGCTAAACACATACCAAATTGCAAAGTATTACACTGGCGTCTACTGTAACGTTCGTCCCTCGTTCCTCGTTTTACT
TGCATTTTAGAAACCTGTATAGCGCTTCTGTTTTAACCAGATAATCAAACCGGTTTTCCGGTTTAGATTCTATACAAACGAAAGGC
TGGATTGAGTTTCG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567064 rhomboid-like protein 15 [Arabidopsis thaliana] | 1852 | 8e-205 |
| AAM65024 unknown [Arabidopsis thaliana] | 1848 | 2e-204 |
| XP_002878222 rhomboid family protein [Arabidopsis lyrata subsp. lyrata] | 1845 | 5e-204 |
| NP_001190126 rhomboid-like protein 15 [Arabidopsis thaliana] | 1811 | 4e-200 |
| BAH57020 AT3G58460 [Arabidopsis thaliana] | 1671 | 7e-184 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LB17 Uncharacterized protein At3g58460 | 1866 | 8e-208 |
| Q8RXW0 Uncharacterized protein At3g17611 | 212 | 5e-016 |
| O74926 Rhomboid protein 2 | 188 | 3e-013 |
| Q6NTF9 Rhomboid domain-containing protein 2 | 165 | 1e-010 |
| Q8VEK2 Rhomboid domain-containing protein 2 | 156 | 1e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0Z2U1 AT3G58460 protein | 1671 | 5e-184 |
| B9H9X7 Predicted protein | 1480 | 7e-162 |
| B9T029 Rhomboid protein, putative | 1328 | 3e-144 |
| B6TE56 Rhomboid family protein | 1164 | 3e-125 |
| C0HEG2 Putative uncharacterized protein | 1163 | 4e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G58460.1 ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) | 1867 | 5e-209 |
| AT3G17611.1 ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding | 212 | 4e-017 |
| AT3G59520.1 ATRBL13 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13) | 194 | 5e-015 |
| AT3G17611.2 ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding | 161 | 3e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
