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Information for unigene UN41839
| FASTA Sequence |
| Unigene ID: UN41839 | Length: 1121 |
SSR | | GTGGGACAGAAGGTTTATAATTTGTTTTTCCATAACTAGAAAGCACTCAAACTTGTTCTGTAGAGAAAGTGTAACAAAAAATGATA
GAATTAAGAACAAAATTAAACTAAGACAGTAGAGAGATAGATAGATAGATAGATGCTGAAGGACCAAGGAGGGGTCTTCATTTGCC
CAACGATGGGAACTGAGCACTGTCTCCGATGGCCGGAGCAGGAGCTCCTCCGTTCACTTTTTCCTCAACCTTTGTGGCTTGCAGAG
CTTTCTTCTTCTCCTCCATAATTTTCTCATACTCTTCCAATGTCATTTCCTTGTCTTCAGGTTCTTTCTCCTTTTCCTCATCAGCA
GGAGCCTCATTCTTTGCATCGGTGGTGTTGTTCTCACCGCCTTCCTTCTCAGCAACAGAGCTCTTCTCAACCTCTGTTGTGGCTTC
CTCCGTTGGAGGTGGAATATCATCTTCAGGGGTACCCCAGTTTCCACGACCACCACCCTCACGTTTCAGGTCATTACCACGACCTG
TCCCGCTACGGCGCTCAAAGGCCCTCTTTGGACGGCCTTCCACATCACCAGCTCTACCATTGGCAAATCCACCACGTTGACCTCCA
CGGCCACCACTTTCGCGGTATCCACGGAATCCACCAGTCCTTTCTCCATCCTTTGGATCATGAAGTCTGTCTCCTCCGGGGTTAAA
TGAACCACGAGGAGCCCCACGTCCGGCACCACCACCACCACCACGACCTCCTAAAGGAGCATTCCTTGACTCTCTCACAGCTTGAG
AAGTAGGAGGCTGCTTGGTCTGAACCTTAGCACCCTTAGCAACAGGCTGAACAGGAGCTGCTTTCTCGACCTTCTTCGGCAAAGAA
ACAACAATCTGGCTTGGATCCTCAGCGTCACCTCCCAAGAGATCAAACGGGTTCAAAGTCGACATTTTTGGGATTCTGGTGAAATC
GAATAGACCACGAGAAGACTGTTTTCGCTTTGATGGGTTTTTCGACCTTATTGACTACACGAATCCATGGAAGAAATCTGAATCAA
AAGGTCTGAAGGGATGATTTCGGACAAGAGTTGTGTTTGTTTTGTATGACTCTCAGAAGTCGAATGGGAGAGTGAATGTGGGAGCT
TTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABD65038 nuclear RNA binding protein, putative [Brassica oleracea] | 1024 | 5e-109 |
| ABD64914 nuclear RNA binding protein, putative [Brassica oleracea] | 897 | 3e-094 |
| XP_002870099 hypothetical protein ARALYDRAFT_493124 [Arabidopsis lyrata subsp. lyrata] | 642 | 1e-064 |
| XP_002863351 hypothetical protein ARALYDRAFT_494257 [Arabidopsis lyrata subsp. lyrata] | 508 | 4e-049 |
| CAA66481 transcription factor [Vicia faba var. minor] | 473 | 4e-045 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q61B10 Probable H/ACA ribonucleoprotein complex subunit 1-like protein | 155 | 1e-009 |
| Q8BH43 Wiskott-Aldrich syndrome protein family member 2 | 143 | 3e-008 |
| O08816 Neural Wiskott-Aldrich syndrome protein | 143 | 3e-008 |
| Q91YD9 Neural Wiskott-Aldrich syndrome protein | 140 | 7e-008 |
| Q7XTS4 Protein argonaute 2 | 139 | 1e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9M2 Nuclear RNA binding protein, putative | 1024 | 4e-109 |
| Q2A9V8 Nuclear RNA binding protein, putative | 897 | 2e-094 |
| A8MQD7 Uncharacterized protein At5g47210.3 | 476 | 1e-045 |
| O04237 Transcription factor | 473 | 3e-045 |
| Q9SQ55 Nuclear RNA binding protein A | 469 | 8e-045 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G16830.1 nuclear RNA-binding protein (RGGA) | 488 | 3e-049 |
| AT5G47210.1 nuclear RNA-binding protein, putative | 476 | 7e-048 |
| AT5G47210.3 nuclear RNA-binding protein, putative | 476 | 7e-048 |
| AT5G47210.2 nuclear RNA-binding protein, putative | 437 | 2e-043 |
| AT4G17520.1 nuclear RNA-binding protein, putative | 421 | 2e-041 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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