 |
Information for unigene UN41844
| FASTA Sequence |
| Unigene ID: UN41844 | Length: 1510 |
SSR | | TCTTGAAGCAAGTTTCTTATTAATGGATAAAGAAGTTCTCTCTGCAATGAACTGAAACAAAACTCCAGAGTGAAAACTGAGTACAG
ACCAAACAGTGCAACTGTTCAACTACAAGAAGTTTACTCAAAGGACCAAACACAAAACATATAGAGACTTGAAAAGAAAAAACAAA
GCTACTAAATCACTGCTTCTCAGCTTTGTAACTAGACCCACGAACATTATCACAAACCATAGTAATCTACACCAATTTCAAGAGCA
GACAGATCAAATGAGGAGCGGAAAGGAAGAGGGTTTCATGTCTGAGTCCCGTTTTAAAGCTGCACTTCTCTGTCATGTATCCAGCT
GAAAGGAATCTTGGGTCCTTTCTTGGCTCTTGCTTGAGCTCTCTCATCCAACCTCCTGATTCTCGGAGTCAGCCCACATAAGTAGT
CTTGTGCTTTGTTTCCTTCACCCGAAAGCCCCTTTAAGTTCTCGATCTTCCACCTCCCAACCAAAAACTCAAGAATGTCTGCGTAG
TCTTTGGCAGTGTAAACACCGAGCCTCTGAGCCACTGAAGAGAAGTTGTCGAAGAGGCTGTCATCACGCCCATCGTACATCAAGTG
AGCAGGCATCGAGATTTTCTTTCTCATCATGTCTGCAAACGCCATGACAGTACCATCAGGATCAATCTCAAAGAGCTTCTCAACTA
TCTTGGTGTAAGCGGTCTCGTGACGCTTCTCGTCTGCAGCTATTGTGCCACATATTTGGGCTAGTTTGAGGTCTCCATGCTCTTTA
GCATGGCGTGCTGTGTTTCCGTGAGAGACGAAGGTGGCTCTTTCTTGGAACGAAGTGTAGATGAAGCCAAGGTAAGGATTGTTCTC
TGTCCTTGGATCCATTCCTGAACCAATCAAGTACTGAATGGTCTTTTCAATCTGCCTCATGTCAACACGACCAGACAAGTAAAGGT
ACTTATTGAGAAGATCACCATGTCGGTTCTCTTCTGCAGTCCAAGCTCTTGTCCAAATAGCCCATGAAGTGGGGCTAGCACCAGTT
TCATCTCTCACTCCATCCAGAGTGTTCAGCATGGTTTGATAGGTGGGAAGCGCTTCTTCCGTGATCATGTCTCCCACCAGAACAAC
AAAGTAATCATCAGGGAGCTCTCTCGCCCTCTCTCTTAACTCTCTGACCTGATCTTCGAACCCGTCGGATGCAGGGTCGGGTAAGA
AGTCCTGGGGCTGCCACGACTTCTCCACGTCCTTGAGATGAGTTAGAAGGTTCTGCTCGGCCCAGCCTTCCATGGATTTGAAGATC
TGAAAGTAGAGATTGGCGGACGAGCCGAGGAAGGGAAGTTGTAAGGCTGAGATGCCAGATGGTTAAGCTTCAATGCCATAATATCT
TTTGTGGATTCTTTCAGAGACAAGCGAGCTCTCTCTCTCTCAGACTATATCTGGCTCTCGTTCTCTGGTTCCTTCTTTTAAAGGTT
GAGTTTCGTCCACAGAAAAGAGAATGGCAAACAGCGGCGAGGCAACCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| P29108 RecName: Full=Acyl-[acyl-carrier-protein] desaturase, chloroplastic; AltName: Full=Stearoyl-ACP desaturase; Flags: Precursor | 1678 | 1e-184 |
| CAA52786 Stearoyl-acyl carrier protein desaturase [Brassica napus] | 1675 | 3e-184 |
| AAD40245 plastidic delta-9-stearoyl-acyl-acyl carrier protein desaturase [Brassica juncea] | 1667 | 2e-183 |
| XP_002880063 hypothetical protein ARALYDRAFT_903770 [Arabidopsis lyrata subsp. lyrata] | 1667 | 2e-183 |
| NP_850400 acyl-[acyl-carrier-protein] desaturase [Arabidopsis thaliana] | 1666 | 3e-183 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P29108 Acyl-[acyl-carrier-protein] desaturase, chloroplastic | 1678 | 5e-186 |
| Q01771 Acyl-[acyl-carrier-protein] desaturase, seed specific, chloroplastic | 1649 | 1e-182 |
| P22337 Acyl-[acyl-carrier-protein] desaturase, chloroplastic | 1558 | 4e-172 |
| P22243 Acyl-[acyl-carrier-protein] desaturase, chloroplastic | 1535 | 2e-169 |
| Q42807 Acyl-[acyl-carrier-protein] desaturase, chloroplastic | 1529 | 9e-169 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39355 Acyl-[acyl-carrier-protein] desaturase | 1675 | 2e-184 |
| Q9XQR7 Acyl-[acyl-carrier-protein] desaturase | 1667 | 2e-183 |
| O22832 Acyl-[acyl-carrier-protein] desaturase | 1666 | 2e-183 |
| Q3EBH3 Acyl-[acyl-carrier-protein] desaturase | 1666 | 2e-183 |
| Q09JZ0 Acyl-[acyl-carrier-protein] desaturase | 1664 | 3e-183 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G43710.2 SSI2; acyl-[acyl-carrier-protein] desaturase/ stearoyl-CoA 9-desaturase | 1667 | 8e-186 |
| AT2G43710.1 SSI2; acyl-[acyl-carrier-protein] desaturase/ stearoyl-CoA 9-desaturase | 1667 | 8e-186 |
| AT3G02630.1 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative | 1447 | 3e-160 |
| AT5G16240.1 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative | 1421 | 3e-157 |
| AT3G02610.1 acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding | 1296 | 9e-143 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
