RadishBase

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Information for unigene UN41895

FASTA Sequence

Unigene ID: UN41895	Length: 876	SSR
ATCGCATTTTCCCAATTTTCTTATCATCTATACTTACTAGCTGAAACACAACCCTAAATCTCAGAAACCGACTTCTCCTCCTTCTG ATGGCATGTCAAATTCAAGCTTCACGCATTTTAACATCATCGTCAATCATCGAAATCGATAAAGGTCGATCCTTTATGATCAATGT CTTCCACACAAAGATCACTCCCATGAAAAGTCTTCAGATTCGAAGAAGACCGAATCAGAGAATAACAGCGTTTGCGTTAGACACAG GAGGAGGCTCTTCAGTTCCTCCTCCTCCTGGTCCTGGAGATAACGACGGAGGAGGAGACAGAACAGGTCTAGGTAGCACTAGATTA GGCAGAATCGCTGTTGCGTTAGGCAGACAGCTGCTTGTGAAGATAAACTCTGCGAGACAAAACTTCCCCATGAAGATATTTCTACT GCTTCTTGGTTTCTACACTGCTAATGCATTGGCCACCATTCTTGGCCAAACCGGTGACTGGGACGTGCTCGTCGCGGGTATAGTCG TCGCTGCCATCGAAGGTATCGGTATGCTTATGTATAAGAAGAAGAAGCAACAGCCATCTTCTTCTTCTTCTTCTTCTTCTGGGAAG TTGCAGTCTTTTGTTGTCTTTGTGAATTTCTGGAAAGCTGGTGTTTGTTTGGGTCTCTTCGTTGATGCTTTCAAGTTGGGTAGTTG AAACATAAATAGTCCTTTCTTTTCTTCTACTGTATGAGTATAGATAGAGAGAGAGCCTTTGATTAGAGTTTACACAAGTGTATCAG TTCAGAACTAAAGTTTCAGTTCTGTCTGAGAATGCAAGTCCTCATGTCTTATTCATTAAACTCTTGCTTCTCTTTTACGAGTAGGC TTAAGATTTGTTTTAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_564851 Ycf20-like protein [Arabidopsis thaliana]	656	2e-066
XP_002888405 hypothetical protein ARALYDRAFT_894093 [Arabidopsis lyrata subsp. lyrata]	650	8e-066
AAM65756 antigen receptor, putative [Arabidopsis thaliana]	648	1e-065
AAC27150 T8F5.20 [Arabidopsis thaliana]	503	9e-049
XP_002267846 PREDICTED: hypothetical protein [Vitis vinifera]	490	3e-047

Swiss-Prot top hits (Blast detail)	Score	e value
O80813 Ycf20-like protein	685	3e-071
Q9MUL5 Uncharacterized protein ycf20	250	9e-021
P51214 Uncharacterized protein ycf20	132	4e-007
Q1XDS2 Uncharacterized protein ycf20	129	1e-006
O78445 Uncharacterized protein ycf20	123	5e-006

TrEMBL top hits (Blast detail)	Score	e value
B9RM29 Putative uncharacterized protein	520	7e-051
C6TEB6 Putative uncharacterized protein	474	1e-045
B9HHY4 Predicted protein	472	2e-045
C6SXW9 Putative uncharacterized protein	434	6e-041
B8AEK3 Putative uncharacterized protein	415	1e-038

Arabidopsis top hits (Blast detail)	Score	e value
AT1G65420.1 unknown protein	686	2e-072
AT3G56830.1 unknown protein	265	1e-023
AT3G56830.2 unknown protein	240	1e-020
AT3G56830.3 unknown protein	240	1e-020

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			50%


18	1			25%


10	1			25%

Unigene Members	Member information